Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq380849 370 1e-97 seq83784 134 2e-26 seq705227 122 1e-22 seq218873 98.7 1e-15 seq707336 96.9 5e-15 seq162926 96.9 5e-15 seq660234 93.3 5e-14 seq170842 91.5 2e-13 seq154428 87.8 2e-12 >seq380849 Length=1041 Score = 370 bits (410), Expect = 1e-97 Identities = 613/878 (70%), Gaps = 19/878 (2%) Strand=Plus/Plus Query 35887 TTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATT 35946 |||||| |||||||| | | | || |||| || || ||||||||||| || ||||| Sbjct 92 TTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAGGGATT 151 Query 35947 GATAACATTA---TAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACAAA 36003 | ||||| ||| || || |||||||| | | | || |||||| | || | Sbjct 152 TTTTGCATTAAAATAAGCTTCGTT---TCCCAATTGACACAACAGTCTATCACCAACGTA 208 Query 36004 TTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCAC 36063 ||||||||| ||| ||| ||| ||||||| || || | | ||| | ||| Sbjct 209 TTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCATT 268 Query 36064 AGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATATTACTGTTTCTTC 36123 | | | ||| || | |||||| | | || || |||||| | || ||||||| Sbjct 269 AATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTTTCTTT 328 Query 36124 ACTCGGTGGATACAATAAATGTT---TAAACATCAAACATGCGAAATCGCAGTGTAGACC 36180 | ||| | | |||||| | |||| | ||| ||||| || ||||| || | || Sbjct 329 AGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATCCC 388 Query 36181 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 36240 |||||||||||||||||||||||| || | | || | || || | ||||| Sbjct 389 TTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTTTT 448 Query 36241 AAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 || |||||| || |||||||| |||||||| ||||| ||||| || |||||||| || Sbjct 449 AATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAAGC 508 Query 36301 AATAAGTCTCTCTCCATAACCGGCACTGTCA---TGTATCCACTTTTGAGCCCAATCGGC 36357 | ||| | |||||| ||| ||| | || |||||||| |||| | ||| || || Sbjct 509 CACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCCGC 568 Query 36358 CTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACT 36417 ||| ||||| | ||||| || ||||| |||||||| | | | ||||||| || | Sbjct 569 CTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTCG 628 Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || | ||||| || ||||||||| |||||||| |||||||| || Sbjct 629 ATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATCAT 688 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCG--GTAATCTGTACTTCTGTACAAAATCGT 36535 || |||||||| || ||| | | ||||| ||| | | |||||| | |||| ||| Sbjct 689 CACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATT--GGACTTCTTTGGAAAACCGT 746 Query 36536 TCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 36595 || ||| ||||||||| ||||| || ||||||||||||||||| ||||| || || | Sbjct 747 TCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGAT 806 Query 36596 ATAAAATATTTTTCGTT-TGGTGTTAGT--TTATTCCAATCATTGATATCTTTAGATATA 36652 ||||| | | ||| || | | | | | || ||||||| ||| ||| |||| | | Sbjct 807 ATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGTAGAAAAA 866 Query 36653 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 36712 |||| ||||| || |||||||| || |||| | |||||||||| ||||| |||||| Sbjct 867 TCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATGTCA 926 Query 36713 TGATATTGAATTGGAAAAATAACAAATCTATTTTGATT 36750 |||| ||| || ||| || ||||| | ||| |||| || Sbjct 927 TGATGTTGTATAGGATAAGTAACATACCTACTTTGTTT 964 >seq83784 Length=3932 Score = 134 bits (148), Expect = 2e-26 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 36542 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 36601 || |||||||| || || || ||||| |||||||| || |||| |||||| |||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 36602 TATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 36661 | ||| || | | | || | ||| | | ||| ||||||||||| ||| |||||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 36662 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 36721 || ||||||| || || || ||||| || || ||||| ||||| ||||||||||| | | Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTCA 3665 Query 36722 ATTGGAAAAATAACAAATC 36740 || || || | |||||||| Sbjct 3664 ATGGGGAAGACAACAAATC 3646 >seq705227 Length=470 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||| || ||||| || ||||| | || | ||||| Sbjct 316 CCTCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTT 257 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | | ||| ||||| | ||||| ||||| || || || ||||| || || ||||||| Sbjct 256 TCAACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGG 197 Query 36300 CAATAAGTCTCTCTCCATAACCGGCACTG---TCATGTATCCACTTTTGAGCCCAATCGG 36356 ||| || ||| ||| |||| ||| | |||| |||||| || ||||| || | Sbjct 196 CAACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTG 137 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 |||||||||| ||||| || | ||||| |||||||| || ||||| Sbjct 136 CCTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGATA 91 >seq218873 Length=1880 Score = 98.7 bits (108), Expect = 1e-15 Identities = 333/513 (65%), Gaps = 17/513 (3%) Strand=Plus/Plus Query 65784 TGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTC 65843 ||||| || || | || ||||| || | ||| || || ||||||| || || || Sbjct 469 TGTATGATTTCTGCACACAGATTGCTGCTCTTTATAGTCCCTAAATGTTTATGGTTGGAT 528 Query 65844 TTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCT 65903 |||| |||||| |||| || || ||| | || || || |||||||| || | Sbjct 529 TTTTCGTTACATTCATCTTTGAGTAGCATGTAAGGGGTTCCGGTTTCAATTTGTGCCATA 588 Query 65904 ATAATCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTTT------TC 65956 ||||| || ||| | |||| ||||||| | | |||| |||| |||| || Sbjct 589 ATAATACTTTGCCATATATCTCGGGCCTTTACAACTTGATT-GTATTTCTTACTGGGATC 647 Query 65957 TCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGG 66016 | ||||| || || || ||| ||||| | || | || | || || Sbjct 648 ATTCTCGTAAGACGTGTATAACTTTTCAAACTCAGCACCGTAGCAATCGGATAAACCTTC 707 Query 66017 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 66076 |||||| |||||||| || | ||| ||| | || | |||| || | ||| || Sbjct 708 ACATTCGCTAGGACACATTAAAGTCCAGTCTGCACCAGCTCGAACTCTTTCAAAAAACAG 767 Query 66077 ATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 66136 || |||| ||| | ||| | || ||||||||||| || | ||| || || ||||| Sbjct 768 ATTCGGAAGCCATAACGCTGTGAACAAATCTCTGGTCCTTTCTTCATCTACCCCCGTATT 827 Query 66137 CTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCAT 66196 ||||||||||| | |||||| || || || |||||| |||||| || | | | Sbjct 828 TTTTTTAAGATCTAAGAACGCAATTATGTCGGCATGCCATGGTTCC-AGAAAA-----AA 881 Query 66197 AACTCCAGG-CCGTTTGTTT--CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 66253 ||| ||| || ||| ||| ||||||||| | | ||| | ||| |||| |||| Sbjct 882 AACCAAAGGTCCCTTTCTTTTATCTCCCTGATTGACGAGTCTTGTCGTGGAATTAAAAAC 941 Query 66254 TCTCAACATTGGAATAATACCATTGGATGTACC 66286 ||| ||| ||| | |||||| ||| |||| Sbjct 942 TCTTAACCGTGGCACTATACCACGAGATATACC 974 >seq707336 Length=468 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 159249 GTTAAAATTAACAAGGATCCCaaaaaaaTTCCAGAGTGGTTGGTAGTTAATAAAATCTAT 159308 || || || ||||| || || ||| | ||| | ||||| |||||||| || | Sbjct 466 GTGAAGATCAACAAAGACGTCACCAAAGTACCAAACTGGTTACATGTTAATAAG-TCCCT 408 Query 159309 ATTCCC-GATTTTGTAGTAGAGGATCCGAAACAATCTCAAATATGGGAAATTTCAGGAAC 159367 |||| |||||||| || |||| || | | |||| | ||| ||||||||| ||| | Sbjct 407 GGTCCCTGATTTTGTTGTCAAGGACCCAAGAGAATCGCCAATTTGGGAAATTATAGGGGC 348 Query 159368 AGAGTTTAC---ATCTTCCAAGTCACATACAGCAAATGGAATATCGATTAGATTTCCTAG 159424 |||||||| |||| | || | |||||||| |||| ||||||||||||||||| || Sbjct 347 AGAGTTTAGTAAATCTCC--AGCC-CATACAGCTGATGGGATATCGATTAGATTTCCCAG 291 Query 159425 ATTTACTAGGATTAGAGAAGATAAAACGTGGAAA 159458 || || ||||||| |||||||| ||| || Sbjct 290 GATTGCTGAAGTTAGAGATGATAAAACATGGGAA 257 >seq162926 Length=2426 Score = 96.9 bits (106), Expect = 5e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 |||||||| || |||||||||| |||||||||||| ||| ||||||| |||||| Sbjct 128 TTACTACATTTAATGGTTCCTAGATTTTGTTGATTTGACTTCCTGTTACAGTGATCCTTG 187 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 || | ||| |||| ||||||||||| | ||||||||||| || || | ||| Sbjct 188 TATAACATGTATGGTGTACCAGTTTCTGTTTGAGATTCTATGATGGCATACCA 240 >seq660234 Length=515 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 ||| |||| ||||||||||| || | || |||||||| ||||||||||| || || || Sbjct 265 ATCCTTAATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGC 206 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 || || ||||| |||||||| || ||||| ||| || ||||| ||| |||| ||| Sbjct 205 TATCTGGAATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACTGAATCTTTC 146 Query 36538 T 36538 | Sbjct 145 T 145 >seq170842 Length=2335 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| | ||||| ||||| || || | ||| || | || || || ||||| || | Sbjct 413 TCCAAGCATAAAAGTGCATGCTGGTCAATTTTCCGTAGTTTGGTTCAGCAATATGAATGT 354 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | |||||| || || || || || || || ||||| |||| |||||| |||||||||| Sbjct 353 TGAGAGATTGGCTCTGGTCAATAAAAGCACCTCTGTCGGCAGACATTTTGATGATCGTCT 294 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATA 65053 | |||| |||||||| | ||| ||||| Sbjct 293 TCTGTGATATTTCCCATACAGTCTTATA 266 >seq154428 Length=2533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 65805 TTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 65864 |||||||| || |||||||||| |||||| ||||| ||| ||||||| |||||| Sbjct 1264 TTACTACATTTAATGGTTCCTAGATTTTGCTGATTTGACTTCCTGTTACAGTGATCCTTG 1205 Query 65865 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 65917 || | ||| | || ||||||||||| | ||||||||||| || || | ||| Sbjct 1204 TATAACATGTAAGGGGTACCAGTTTCTGTTTGAGATTCTATGATGGCATACCA 1152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649926437808560