Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq380849 250 2e-61 seq705227 113 4e-20 seq120769 104 2e-17 seq83784 89.7 5e-13 seq660234 86.0 6e-12 >seq380849 Length=1041 Score = 250 bits (276), Expect = 2e-61 Identities = 583/868 (67%), Gaps = 26/868 (3%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 |||||||||||||| || || | | | || || || || || |||||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 13656 GGATTTATTGACATAAACA----CTT--TATCACAACCTAGTTCTAATAGTAATCTATCA 13709 |||||| ||| ||| || | ||| | || ||| || | | | ||||||| Sbjct 147 GGATTTTTTG-CATTAAAATAAGCTTCGTTTCCCAA-----TTGACACAACAGTCTATCA 200 Query 13710 GCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGA 13769 ||| | || ||||| |||||| | ||||||| || || | | || Sbjct 201 CCAACGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGC 260 Query 13770 ATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATA 13829 | ||| ||||||| || ||||| || | | || || |||||| | || Sbjct 261 AAAGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACG 320 Query 13830 ATCTCATTAGAAGGAGGATATTTTAGATGTT---TAAAAATTAAACACGCAAAATCACAA 13886 | || |||||||| | ||| ||| | |||| | || || ||||| || ||| Sbjct 321 GTTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAA 380 Query 13887 TGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAATC 13944 || | || || ||||||||||| | |||||| || | ||||| |||| | |||| Sbjct 381 TGCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCA--GTTAACGCTGGTAATAATC 438 Query 13945 CTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTG 14004 ||| ||||| | |||||| || | ||||| || ||||| || || || ||||| | Sbjct 439 CTCTATTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCG 498 Query 14005 CAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAG 14064 | ||||| || | | ||||||||||| || | | | | |||||||||| || Sbjct 499 CCGCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTAC 558 Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCT 14124 |||||| | ||||||||||| ||| ||||| || |||||||||||| ||| | Sbjct 559 TCCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTT 618 Query 14125 TCT-CTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTAT 14182 | | |||| | ||| || |||| | ||||| || | | ||||||| || || ||||| Sbjct 619 TTTGCTTTCGATCTTTAA-TGTACGACTCAATTAACTGA-CTATACAACTCCGAATGTAT 676 Query 14183 GTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGA 14242 ||||||||| | |||||| |||||||| | | || ||| | |||| ||||| Sbjct 677 GTTTTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTT 736 Query 14243 GTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAA 14302 | |||| | ||| | | ||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 737 GGAAAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAA 796 Query 14303 TATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGATAAATC 14359 | || ||||| | | | |||| || || | |||||||||| | || Sbjct 797 AACGTGAGATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTC 856 Query 14360 CTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTAC 14419 |||||| ||| | || ||||| |||||||||||||| | | |||||||||| Sbjct 857 TGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTT 916 Query 14420 CCATATTTCTTTATATAATATAGGAAAA 14447 |||||| || | || | ||||||| || Sbjct 917 CCATATGTCATGATGTTGTATAGGATAA 944 >seq705227 Length=470 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || || ||||| || ||||| | || ||||| | ||||| |||| Sbjct 316 CCTCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTT 257 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | ||||| |||||||| ||||| || || || ||||| || ||||| || ||||| | Sbjct 256 TCAACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGG 197 Query 14014 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14073 | | | || |||| || | ||||| ||| | | ||||||||| | ||||| || | Sbjct 196 CAACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTG 137 Query 14074 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 || ||||| | | | | || ||||||||||| |||| ||| ||| Sbjct 136 CCTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGATAATCC 87 >seq120769 Length=3061 Score = 104 bits (114), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACAT---TATCGTCTTTGTTAGAAATAACGCCCATT 13580 |||||||| |||| |||| ||| || ||||| || || || || ||||| Sbjct 1727 TAAAAATCGGCATCCAATGTAAATGAATGGGTATCGCCTCCTCCTGACATGACACCCATC 1668 Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 ||||||||||| | |||||||| ||||| ||||| ||||| ||||| ||||| || | | Sbjct 1667 TTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTCTAGTGAGATCTGT 1608 Query 13641 TCCATAAAATCAAATGGATTT 13661 |||||||| |||||||||||| Sbjct 1607 TCCATAAAGTCAAATGGATTT 1587 >seq83784 Length=3932 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 14257 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14316 |||| |||||||| || || ||||||||||||||||| || |||| | | | ||||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAA 3787 Query 14317 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGAT-AAATCCTTAGAAAGATCTACT 14375 | | || ||| |||| || || | ||| | | || | ||| ||||| | ||| ||| Sbjct 3786 AATGTTTCTCCTCATCTTTCAGAGCGTCCCAGT-GAATGAGATCTTTAGATAAATCAACT 3728 Query 14376 TCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATAT 14435 || ||| ||||||| || || | ||||| || |||||| ||| || || | ||| Sbjct 3727 TCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATAC 3668 Query 14436 AATATAGGAAAAACTACAAATC-TCGAAGATGTTTCTTTAAGAAT 14479 || || || || ||||||| || | ||| | ||| || ||| Sbjct 3667 TCAATGGGGAAGACAACAAATCGTCTAGGATTATCCTTCAACAAT 3623 >seq660234 Length=515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14141 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14200 ||||||||||||||| | ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 259 AATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGCTATCTG 200 Query 14201 AAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCC 14240 || ||||| || || || || || | ||| |||||| Sbjct 199 GAATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473717403935600