Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq380849 235 5e-57 seq120769 104 2e-17 seq83784 93.3 4e-14 seq660234 87.8 2e-12 >seq380849 Length=1041 Score = 235 bits (260), Expect = 5e-57 Identities = 582/869 (67%), Gaps = 28/869 (3%) Strand=Plus/Plus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||||||||||||||| || | | | || || || || || |||||||| || || Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 13444 GGATTTGTTGACATAAACA----CTT--TATCACAACCTAGTTCTAATAATAATCTATCA 13497 |||||| ||| ||| || | ||| | || ||| || | || | ||||||| Sbjct 147 GGATTTTTTG-CATTAAAATAAGCTTCGTTTCCCAA-----TTGACACAACAGTCTATCA 200 Query 13498 GCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGA 13557 ||| | || ||||| |||||| | ||||||| || || | | || Sbjct 201 CCAACGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGC 260 Query 13558 ATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTT-AAT 13616 | |||| ||||||| || ||||| || | | || || |||||| ||| || Sbjct 261 AAAGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATA-TCTCGAAC 319 Query 13617 AATGTCATTAGAAGGAGGATATTTTAGATGTT---TAAAAATTAAACACGCAAAATCACA 13673 | || |||||||| | ||| ||| | |||| | || || ||||| || || Sbjct 320 GGTTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCA 379 Query 13674 ATGAAGGCCCTCATCTCTACTAATAAGTTCGTT--TGAAAATGTTAATCCTGGCATCAAT 13731 ||| | || || ||||||||||| | |||||| || | ||||| |||| | ||| Sbjct 380 ATGCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCA--GTTAACGCTGGTAATAAT 437 Query 13732 CCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 13791 |||| ||||| | |||||| || | || || || ||||| || || || ||||| Sbjct 438 CCTCTATTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACC 497 Query 13792 GCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTA 13851 || ||||| || | || ||||||||||| || | | | |||||||||| || Sbjct 498 GCCGCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTA 557 Query 13852 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 |||||| | ||||||||||| ||| ||||| |||||||| |||||| || Sbjct 558 CTCCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTT 617 Query 13912 TTCT-CTTTAGTACTTGAAATGTATGTATCAAT-AAGTAAGCTATACATTTCAGAGTGTA 13969 || | |||| | ||| || |||| | ||||| || | | ||||||| || || |||| Sbjct 618 TTTTGCTTTCGATCTTTAA-TGTACGACTCAATTAACTGA-CTATACAACTCCGAATGTA 675 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || | |||||| ||||||||| | | || || | |||| || || Sbjct 676 TGTTTTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTT 735 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | |||| | ||| | | ||||||||||| || |||||||| ||||||||||| |||| Sbjct 736 TGGAAAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCA 795 Query 14090 ATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA---GTTTTTTCCAATCGGCTAAAT 14146 | | || ||||| | | | |||| || || | |||||||||| | | | Sbjct 796 AAACGTGAGATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGT 855 Query 14147 CCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTA 14206 | |||||| ||| | || ||||| |||||||||||||| | | |||||||||| Sbjct 856 CTGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGT 915 Query 14207 CCCATATTTCTTTATATAATATAGGAAAA 14235 |||||| || | || | ||||||| || Sbjct 916 TCCATATGTCATGATGTTGTATAGGATAA 944 >seq120769 Length=3061 Score = 104 bits (114), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 3/141 (2%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACAT---TATCGTCTTTGTTAGAAATAACGCCCATT 13368 |||||||| |||| |||| ||| || ||||| || || || || ||||| Sbjct 1727 TAAAAATCGGCATCCAATGTAAATGAATGGGTATCGCCTCCTCCTGACATGACACCCATC 1668 Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 ||||||||||| | |||||||| ||||||||||| ||||| ||||| ||||| || | | Sbjct 1667 TTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTCTAGTGAGATCTGT 1608 Query 13429 TCCATAAAATCGAATGGATTT 13449 |||||||| || ||||||||| Sbjct 1607 TCCATAAAGTCAAATGGATTT 1587 >seq83784 Length=3932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 14045 CCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14104 ||||||||||||| ||||| ||||||||||||||||| || |||| | | | ||||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAA 3787 Query 14105 AGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTT 14164 | | || ||| |||| || || | ||| | | ||| ||||| | ||| |||| Sbjct 3786 AATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTT 3727 Query 14165 CATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATA 14224 | ||| ||||||| || || | ||||| || |||||| ||| || || | ||| Sbjct 3726 CTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACT 3667 Query 14225 ATATAGGAAAAACTACAAATC 14245 || || || || ||||||| Sbjct 3666 CAATGGGGAAGACAACAAATC 3646 >seq660234 Length=515 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 ||||||||||||||| | ||||| ||||||||||| || ||||| || || |||||||| Sbjct 259 AATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGCTATCTG 200 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| || || |||| Sbjct 199 GAATCCATAGAAACACCTTGCCTCTG 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472592477171760