Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq380849 232 6e-56 seq120769 105 6e-18 >seq380849 Length=1041 Score = 232 bits (256), Expect = 6e-56 Identities = 565/846 (67%), Gaps = 20/846 (2%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||||||||||||||| |||| | | || |||| ||||| |||||||| || ||||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAA--CGAAA 144 Query 12935 --GGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAA 12992 |||||||| | | | | || || || |||| |||| ||| ||| ||| Sbjct 145 AGGGATTTTTTGCATTAAAATAAGCTTCGTTTCCCAATTGACACAACAGTCTATCACCAA 204 Query 12993 CAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAG 13052 | | ||||| ||| | |||| | | ||||| || || || | |||| || Sbjct 205 CGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAG 264 Query 13053 CTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGT 13112 | | ||||||||| ||||| || | | || || | || || |||| | || Sbjct 265 CATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAA---CGG 321 Query 13113 TCTCTAATGGAGGATT--TGAT-AGATGCT---TAAACATCATACATGCAAAATCACAGT 13166 | ||| | ||| || | || | ||| | |||| | || |||||||| || || | Sbjct 322 TTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAAT 381 Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTT--TGAAAATGTTAGACCCGGCATAAGCCC 13224 ||| ||||| |||||||| |||| ||||| || | |||| | || | | || Sbjct 382 GCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCA--GTTAACGCTGGTAATAATCC 439 Query 13225 TCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGC 13284 || |||||||||||||| |||| ||||| ||| |||||||| || |||||||| || Sbjct 440 TCTATTTTTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGC 499 Query 13285 TGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGC 13344 ||||| || | | | ||| ||| | | | | | || |||||| ||| | Sbjct 500 CGCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACT 559 Query 13345 CCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAttttt 13404 ||| | || |||| ||||| | |||| |||||||||| ||||||||| | ||||| Sbjct 560 CCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTT 619 Query 13405 ttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATT 13464 || ||| | ||| ||| || | || || || ||||||| || ||||| || || Sbjct 620 TTGCTTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTT 679 Query 13465 TTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTA 13524 ||||||| | || || ||||||||| | | ||||| | || ||||| | | Sbjct 680 TTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGA 739 Query 13525 AAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTAT 13584 ||| | ||| ||| ||||| |||||||| || ||||| || ||||||||||| | | Sbjct 740 AAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAAC 799 Query 13585 GTGCTTAATAAAttttttttCGTTTTC--TGACAAC-TTTAACCAATCTGGAAAATCTTT 13641 ||| ||||||||| ||| || || | | | | ||| ||||| | ||| | Sbjct 800 GTGAGATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGT 859 Query 13642 TGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCA 13701 || ||||| | ||| ||||| ||||||||| ||| | | | | |||||||| |||| Sbjct 860 AGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCA 919 Query 13702 TATATC 13707 ||| || Sbjct 920 TATGTC 925 >seq120769 Length=3061 Score = 105 bits (116), Expect = 6e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 12844 TGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCC 12903 |||||| ||| ||| ||||||||||| | |||||||| |||||||||||||||||||| Sbjct 1683 TGACATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCC 1624 Query 12904 TTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 ||||| || || | ||||||||| || || ||||||| Sbjct 1623 TTCTAGTGAGATCTGTTCCATAAAGTCAAATGGATTTT 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425717542436268