Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq380849 223 8e-53 seq227251 136 9e-27 seq92178 120 7e-22 seq203241 104 5e-17 seq40568 102 2e-16 seq152430 98.7 2e-15 seq705227 96.9 8e-15 seq148027 93.3 1e-13 seq125276 91.5 3e-13 seq123025 91.5 3e-13 >seq380849 Length=1041 Score = 223 bits (246), Expect = 8e-53 Identities = 423/619 (68%), Gaps = 8/619 (1%) Strand=Plus/Minus Query 268714 TCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGAC 268773 ||| ||||| ||| ||| ||||||| ||||| ||| | | | ||| ||||||||| Sbjct 941 TCCTATACAACATCATGACATATGGAACATGTATAAAAGGACAGAAGCTAGTTTTTGGAC 882 Query 268774 TGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAA---ATTTAAAACCAGA 268830 || ||||| | ||| | ||| ||| | | ||||||||| ||||||| | Sbjct 881 GGTTGAAGAGCTGGATTTTTCTACAGACATCGTGCATTGGAAAAATGATTTAAATGATAA 822 Query 268831 AGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAA 268890 |||| ||| |||||||||| | || | || |||||||||| |||||||| || ||||| Sbjct 821 AGAACGAAAATTTATATCTCACGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATAGTTAA 762 Query 268891 CGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATG-TTTTT 268949 |||||| |||| || ||| | |||| || || || | || || || | | ||||| Sbjct 761 TGAAAATATAGTTGAACGGTTTTCCAAAGAAGTCCA-ATACTTGGAGGCAAAAGTTTTTT 703 Query 268950 ACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATA 269009 | ||||| ||| | || ||||| || ||||| ||| |||| |||| ||||| || Sbjct 702 ATGGATTTCAGGTGATGATGGAAAACATACATTCGGAGTTGTATAGTCAGTTAATTGAGT 643 Query 269010 CTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTATGAGAACTATGGACT 269069 | || || | ||| || |||| ||| ||||| | | || ||||||| | Sbjct 642 CGTACATTAAAGATCGAAAGCAAAAAAAATTTTTATTTAATGCAATAGAAACTATGCCCA 583 Query 269070 GTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA---CGATAGCGCGCCTTACG 269126 | | |||||| | |||||| | ||||||||| | ||| | ||| || | Sbjct 582 CAATTAAAAAAAAGGCGGAATGGAGTAAAAAATGGATACAGTCCGAGACTGCGAGTTTTG 523 Query 269127 GAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCG 269186 ||||| | | || |||||||| || || |||||||| || ||||| || ||||| Sbjct 522 GAGAACGTCTTGTGGCTTTTGCGGCGGTTGAAGGTATTTTTTTTTCTGGTAGCTTTGCGT 463 Query 269187 CTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGA 269246 |||| |||||| | || || ||||| | | |||| |||||| | |||||||| | Sbjct 462 CTATTTTTTGGATTAAAAATAGAGGATTATTACCAGCGTTAACTGCCAGCAACGAATTAA 403 Query 269247 TAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATTTACTAATTATCTTT 269306 | || || |||||||| | || |||||||| || || || ||||||| | || | Sbjct 402 TTAGTAGAGACGAAGGGATGCATTGCGACTTTGCATGCTTGTTATTTAACGACCATTTAA 343 Query 269307 CACACAAACCTTCTCAAGA 269325 ||||||||||| |||| Sbjct 342 TTAACAAACCTTCTAAAGA 324 >seq227251 Length=1814 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | ||| | | || ||||| | ||| ||||| || ||||| || || || Sbjct 202 ATTCCACCACGTAGACGCAAAACCAGATGGAGTGTGGATTCCTTTTGAATGTTGTAATCT 143 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| || || ||||| ||||||||||| || || |||| ||||||||||| || Sbjct 142 GAAAGAGTCCTGCCATCTTCAAGTTGTTTTCCTGCGAAGATTAATCTCTGTTGATCTGGT 83 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| ||||| ||||| || | |||||| ||||| Sbjct 82 GGAATACCTTCCTTGTCTTGGATCTTAGCTTTAACATTCTCAATGGTATCCGATGGTTCA 23 Query 104510 ACCTCTAGTGTAATAGTCTT 104529 |||||||| || || || || Sbjct 22 ACCTCTAGAGTGATTGTTTT 3 >seq92178 Length=3697 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 |||||| || | |||||| | ||||||||| ||||| | ||||| ||||| || ||||| Sbjct 722 ATGTAAAGTTGCTTCTTTATAAATATTATAATCAGACAAGGTTCTTCCGTCCTCCAGTTG 781 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||||||||||| | || | |||||||| || || |||||||| || | || || Sbjct 782 CTTTCCAGCAAAGAATAAACGTTGTTGATCTTCCGGAATGCCTTCTTTGTCACGTATTTT 841 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || |||||||||| || || || | ||||| | |||||| || || ||||| Sbjct 842 TGACTTGACATTTTCTATCGTGTCACTCCCCACGACCTCCAATGTAATCGTTTTCCCAGT 901 Query 104536 AAGTGTTTTTACAAATATCTG 104556 | |||||| || | ||| || Sbjct 902 CAATGTTTTGACGAGTATTTG 922 >seq203241 Length=2009 Score = 104 bits (114), Expect = 5e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 ||||||||||||| |||| |||| || | ||||| ||||||| || || || | Sbjct 1109 GCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAATATTTTTTGTA 1168 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 | || |||||| ||| ||| ||||||| ||||||||||||||||| | |||||||| Sbjct 1169 TTGCGTAAGAAAAATAACCAAGTTAGTTTCTTACATGTATATCATCATGCTTCTATGTTT 1228 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 | | | ||||| || |||||||| | || || |||||| Sbjct 1229 CCCCTATGGTGGATTGGAGTTAAATGGGTAGCTGGTGGACAA 1270 >seq40568 Length=5963 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 238765 TAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATAT 238824 |||| |||||||||||||| ||||| | || ||| | |||| || ||| || | Sbjct 3975 TAGGCTGTATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 4034 Query 238825 TTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTT 238884 |||||||| || | |||||||||||||| || ||| | |||||||||||| ||||| Sbjct 4035 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTGCTT 4094 Query 238885 TTATCAGTAAATACAGAGGGA 238905 || | || ||||| ||||||| Sbjct 4095 TTGTTAGAAAATATAGAGGGA 4115 >seq152430 Length=2559 Score = 98.7 bits (108), Expect = 2e-15 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 ||||||||||||| |||| |||| || | ||||| ||||||| || || || | Sbjct 2409 GCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAATATTTTTTGTA 2350 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 | || |||||| ||| ||| |||| || ||||||||||||||||| | |||||||| Sbjct 2349 TTGCGTAAGAAAAATAACCAAGTTAGCTTCTTACATGTATATCATCATGCTTCTATGTTT 2290 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAA 78649 | | | ||||| || |||||||| | || || |||||| Sbjct 2289 CCCCTATGGTGGATCGGAGTTAAATGGGTAGCTGGTGGACAA 2248 >seq705227 Length=470 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/194 (71%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGA---TAGCGCGCCTTAC 269125 ||||||| ||| || | || ||||| | ||||||||||| || | || | || Sbjct 121 TGTGTGAAAAAGAAGGCAGACTGGGCCATTAAATGGATAAATGAAACAAATGCATCATAT 180 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 | |||||| | ||||| ||||| ||||| ||||| ||||| || || || |||||| Sbjct 181 GCAGAAAGAGTTGTTGCCTTTGCAGCTGTTGAAGGGATATTTTTCTCTGGCAGTTTTGCA 240 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 || || || |||||||| || ||||| ||||||| || | || ||| || ||| | Sbjct 241 GCAATATTCTGGTTGAAAAAGAGAGGAATTATGCCTGGTCTCACATTCAGCAATGAACTC 300 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 301 ATCAGCAGAGATGA 314 >seq148027 Length=2619 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 238765 TAGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATAT 238824 |||| || ||||||||||| ||||| | || ||| | |||| || ||| || | Sbjct 359 TAGGCTGCATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 300 Query 238825 TTGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTT 238884 |||||||| || | |||||||||||||| || ||| | |||||||||||| ||||| Sbjct 299 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTGCTT 240 Query 238885 TTATCAGTAAATACAGAGGGA 238905 | | || ||||| ||||||| Sbjct 239 TCGTTAGAAAATATAGAGGGA 219 >seq125276 Length=2979 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 70138 TTTATTACCTTTTCCATAATAAGCTCCTAACACTAATAAATCGGCTTTATCAGCCATACT 70197 |||||| ||| | |||||||||||||| | || | |||||| ||| |||||||| | Sbjct 2622 TTTATTCCCTGTACCATAATAAGCTCCAAGAACAATTAAATCTGCTGAGTCAGCCATTTT 2563 Query 70198 TCCGTTATCTAAATAATCtttttttatttttAACCATCTTCTCATACCAGGTTCATATAC 70257 ||| | ||||| |||||||| |||| ||||| ||| |||| | || ||| ||| || Sbjct 2562 TCCCTCCTCTAAGTAATCTTTCTTTACTTTTAGCCAATGTCTCTTTCCTGGTGAATAAAC 2503 Query 70258 ACCCT 70262 ||||| Sbjct 2502 ACCCT 2498 >seq123025 Length=3020 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 70138 TTTATTACCTTTTCCATAATAAGCTCCTAACACTAATAAATCGGCTTTATCAGCCATACT 70197 |||||| ||| | |||||||||||||| | || | |||||| ||| |||||||| | Sbjct 1304 TTTATTCCCTGTACCATAATAAGCTCCAAGAACAATTAAATCTGCTGAGTCAGCCATTTT 1245 Query 70198 TCCGTTATCTAAATAATCtttttttatttttAACCATCTTCTCATACCAGGTTCATATAC 70257 ||| | ||||| |||||||| |||| ||||| ||| |||| | || ||| ||| || Sbjct 1244 TCCCTCCTCTAAGTAATCTTTCTTTACTTTTAGCCAATGTCTCTTTCCTGGTGAATAAAC 1185 Query 70258 ACCCT 70262 ||||| Sbjct 1184 ACCCT 1180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1136611676150472