Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq275402 95.1 2e-15 seq82073 91.5 3e-14 seq288359 86.0 1e-12 seq43639 86.0 1e-12 seq418687 84.2 4e-12 seq161777 84.2 4e-12 seq8314 80.6 5e-11 >seq275402 Length=1501 Score = 95.1 bits (104), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 4551 AGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATG 4610 |||| ||| |||||| ||| | |||| | || ||||||| ||| |||||| | | Sbjct 87 AGTCATGACATTTGAACAACGACCCTGGTTAAAGACATATATAGATTTAAATACAGA--G 144 Query 4611 CCGAAAA--CTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCG 4668 ||||| || || | ||||||||||| || | |||| |||| | ||||||||||| Sbjct 145 AAGAAAAAGCTTGCACATAATGAGTTCGAGAAGGATTTTTTTAAACTCATGAATAATGCA 204 Query 4669 GTTTTTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATA 4713 || ||||||||||||||||| ||| || | || | ||||||| Sbjct 205 GTCTTTGGAAAGACGATGGAAAATTTAAGGAAGAGAACAGATATA 249 >seq82073 Length=3984 Score = 91.5 bits (100), Expect = 3e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 4551 AGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATG 4610 |||| || |||||| ||| | ||||||||| |||||||||| || || | Sbjct 2821 AGTCATGGCATTTGAACAACGACCCTGGCTCAAGAAATATATCGATTTTAACACAGAGAA 2880 Query 4611 CCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGT 4670 ||||||| || ||||||||||| | || | |||| ||| | ||||||||||| || Sbjct 2881 GAGAAAACTTGCCAAGAATGAGTTTAAGAAGGATTTTTTCAAACTCATGAATAATGCAGT 2940 Query 4671 TTTTGGAAAGACGATGGAGAATGTA 4695 ||||||||||| ||||||||| || Sbjct 2941 CTTTGGAAAGACTATGGAGAATTTA 2965 >seq288359 Length=1431 Score = 86.0 bits (94), Expect = 1e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 4551 AGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATG 4610 |||| ||| |||||| ||| | |||| | || ||||||| ||| ||||| | Sbjct 1247 AGTCATGACATTTGAACAACGACCCTGGTTAAAGACATATATTGATTTCAATACAGAGAA 1188 Query 4611 CCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGT 4670 |||| || || | ||||||||||| || | |||| |||| | ||||||||||| || Sbjct 1187 GAGAAAGCTTGCACATAATGAGTTCGAGAAGGATTTTTTTAAACTCATGAATAATGCAGT 1128 Query 4671 TTTTGGAAAGACGATGGAGAATGTA 4695 ||| ||||||||||||| ||| || Sbjct 1127 CTTTAGAAAGACGATGGAAAATTTA 1103 >seq43639 Length=5741 Score = 86.0 bits (94), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 4551 AGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATG 4610 |||| ||| |||||| ||| || ||||| | || ||||||| ||| ||||| | Sbjct 708 AGTCATGACATTTGAACAACCACACTGGTTAAAGACATATATTGATTTTAATACAGAGAA 649 Query 4611 CCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGT 4670 |||| || || | ||||||||||| || | |||| |||| | ||||||||||| | Sbjct 648 GAGAAAGCTTGCATATAATGAGTTCGAGAAGGATTTTTTTAAACTCATGAATAATGCACT 589 Query 4671 TTTTGGAAAGACGAT 4685 |||||||||||||| Sbjct 588 CTTTGGAAAGACGAT 574 >seq418687 Length=932 Score = 84.2 bits (92), Expect = 4e-12 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4613 GAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTT 4672 |||| || || | |||||||||||||| |||||| ||| | ||||||||||| || | Sbjct 855 GAAAGCTTGCAACAAATGAGTTCGAAAAGGACTTTTTCAAACTCATGAATAATGCAGTCT 796 Query 4673 TTGGAAAGACGATGGAGAATGTACGAAAATATAAAGATATA 4713 |||||||||||||||| ||| || | || | ||||||| Sbjct 795 TTGGAAAGACGATGGAAAATTTAAGGAAGAGAACAGATATA 755 >seq161777 Length=2440 Score = 84.2 bits (92), Expect = 4e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 4630 GAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAG 4689 || || |||||| || |||||||||||||||||||| |||||||| |||||||||||| Sbjct 1148 GATTTTGAAAAATCATTCTATAAATTAATGAATAATGCAGTTTTTGGGAAGACGATGGAG 1207 Query 4690 AATGTACGAAA 4700 || || ||||| Sbjct 1208 AACGTTCGAAA 1218 >seq8314 Length=11767 Score = 80.6 bits (88), Expect = 5e-11 Identities = 125/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 3856 GATTATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAATCAATACGCTTGGAGAGTAC 3915 ||||||| ||||||| ||| ||| | ||||||| || | | |||||||| ||| Sbjct 7010 GATTATGACCATGCTCAACAAGTATGGCAGCAGTTTAACATGCAGAGTCTTGGAGATTAC 6951 Query 3916 TCGGACTTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGA 3975 ||| ||||| ||| | ||||||||| || |||||||||||||||| || ||| Sbjct 6950 CACGACCTATACGTAACAGCAGATGTCCTTGCATTAGCTGATGTCTTTGAAAATTTCAGA 6891 Query 3976 CGTAGTTGTTTCAAGACATACAATTTAGACGCACTACACTTTTATACAGCACCAGGTCT 4034 || || | || || || |||| || ||| ||||||||| |||| ||||| Sbjct 6890 GATATCTGCCTAAACTACTATAAACTAGATGCTGCACATTTTTATACATCACCCGGTCT 6832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96808238517036