Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq380849 242 4e-59 seq120769 104 2e-17 seq705227 102 9e-17 seq83784 87.8 2e-12 >seq380849 Length=1041 Score = 242 bits (268), Expect = 4e-59 Identities = 602/906 (66%), Gaps = 24/906 (3%) Strand=Plus/Plus Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259 ||||||||||| |||||||||| | || || | || || |||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 21260 GGATTTTCAG-ATTTAAATAT--TTTATTACAACCCAGTTCTGATAATAATCTATCTGCT 21316 ||||||| | ||| ||||| || || | ||| || | || | |||||| | Sbjct 147 GGATTTTTTGCATTAAAATAAGCTTCGTTTC---CCAATTGACACAACAGTCTATCACCA 203 Query 21317 ACAAATTCTATATA--TTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAA 21374 || |||||||||| |||||| || || | |||||| || ||||| | || | Sbjct 204 ACGTATTCTATATACGTTGACATTTTTTTTGA--ATTCATCCCAATCAAATCGCATGGCA 261 Query 21375 GAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCC 21434 ||| || | ||||| ||||| || | | ||| |||| ||| |||| | | Sbjct 262 AAGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGG 321 Query 21435 TAGATGTACTAGGGGGATACAATAATTGTT---TAAACATCAAACATGCAAAATCACAAT 21491 | | || ||| | | ||| || | |||| | ||| |||||||| || |||| Sbjct 322 TTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAAT 381 Query 21492 GCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTC 21551 ||| ||||| || ||||| |||||||| || ||||| | || | |||||||| Sbjct 382 GCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTC 441 Query 21552 TCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAAAATGCCCTCAACGGCA 21610 | ||||| | |||||| || |||||||| ||| || ||||| ||||| || ||||| || Sbjct 442 TATTTTTAATCCAAAAAATAGACGCAAA-GCTACCAGAAAAAAAAATACCTTCAACCGCC 500 Query 21611 GCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTTTTCTGC 21669 ||||| || || | ||||| || | | | | ||| | ||||||||||| Sbjct 501 GCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTG-TATCCATTTTTTACT 559 Query 21670 CCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAttttt 21729 ||||| ||||||| |||||| || || || || || || || | | ||||| Sbjct 560 CCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTT 619 Query 21730 ttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATT 21789 || | | ||| | ||| |||||||| || |||||||| || Sbjct 620 TTGCTTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTT 679 Query 21790 TTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATA 21849 ||| ||| | ||||||||| |||||| | ||||||| | |||| || || | Sbjct 680 TTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGA 739 Query 21850 AAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATAT 21909 ||| |||| | | | |||||||| ||||| ||||||||||| |||||||| ||||| | Sbjct 740 AAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAAC 799 Query 21910 ATTTTTTATAAAATATCGTTCGTTATCTGTTAA---TTTTTTCCAATCTAATAAATCTTT 21966 | |||||| | |||||| ||||| |||| |||||||||| | | ||| | Sbjct 800 GTGAGATATAAATTTTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGT 859 Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCA 22026 || ||||| | |||||| |||||||| ||||| | | |||||||||| |||| Sbjct 860 AGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCA 919 Query 22027 GATATCATTATATATTATTGGAAATATTACAAACCTGTTATTTGATTC--AACTAAAAGT 22084 || |||| || | ||| ||| | | ||| ||| | |||| ||| | |||| ||| Sbjct 920 TATGTCATGATGTTGTATAGGATAAGTAACATACC--TACTTTGTTTCGGATCTAACAGT 977 Query 22085 GGTTCC 22090 |||||| Sbjct 978 GGTTCC 983 >seq120769 Length=3061 Score = 104 bits (114), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACAT---TATCTTCtttttttGACATAATTCCC 21181 ||||||||||| ||||| |||| || || |||| || | |||||| | ||| Sbjct 1730 ATTTAAAAATCGGCATCCAATGTAAATGAATGGGTATCGCCTCCTCCTGACATGACACCC 1671 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || |||||||| || | |||||||| || ||||| ||||| |||||||| | ||| || Sbjct 1670 ATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTCTAGTGAGATC 1611 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 ||||||||| |||||||||||||| Sbjct 1610 TGTTCCATAAAGTCAAATGGATTTTC 1585 >seq705227 Length=470 Score = 102 bits (112), Expect = 9e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| ||||| | ||| ||||| | |||||||||||| Sbjct 314 TCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTC 255 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||| ||||||| ||||| || || || || || || ||||| || ||||| ||| Sbjct 254 AACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCA 195 Query 21620 ACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCC 21679 || | || ||| | |||| | | | | || ||||||||| ||||| | |||| Sbjct 194 ACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTGCC 135 Query 21680 TTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAt 21725 || | ||| | ||| | || |||||||| || || |||| || Sbjct 134 TTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGATAAT 89 >seq83784 Length=3932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 |||||||||||||||| || |||||||| || ||||| || |||| | || | |||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAA 3787 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 ||| | || | |||| | | | ||| | | | |||||| |||||||| |||| Sbjct 3786 AATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTT 3727 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATA 22038 |||||| |||||| ||| || || || || ||||| |||| || |||| ||| Sbjct 3726 CTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATA 3669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525236521794160