Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq359010 140 2e-28 seq183596 136 3e-27 seq17184 136 3e-27 seq92178 105 4e-18 seq544227 84.2 1e-11 >seq359010 Length=1118 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 946 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 887 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 886 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 852 >seq183596 Length=2198 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 317 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 376 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| | |||||||||||||||||||||||||| Sbjct 377 TAATCCATCCATGCGCGTCACTAATTAGATGACGA 411 >seq17184 Length=8893 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 1670 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 1729 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1730 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1764 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 4671 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 4730 Query 20007 GGTAATATTTAG 20018 ||| |||||||| Sbjct 4731 GGTTATATTTAG 4742 >seq92178 Length=3697 Score = 105 bits (116), Expect = 4e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGT-GCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 || |||||||| | ||| ||| || || | |||||| ||||||||||| | | |||| Sbjct 714 AAAACCAAATGTAAAGTTGCT-TCTTTATAAATATTATAATCAGACAAGGTTCTTCCGTC 772 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| ||||| ||||| | || ||||||||||| || | |||||||||||| Sbjct 773 CTCCAGTTGCTTTCCAGCAAAGAATAAACGTTGTTGATCTTCCGGAATGCCTTCTTTGTC 832 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 |||||| ||| ||||| | | || || | | | || || |||||||| || Sbjct 833 ACGTATTTTTGACTTGACATTTTCTATCGTGTCACTCCCCACGACCTCCAATGTAATCGT 892 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTG 38314 ||| || ||||| ||||| |||| ||| || Sbjct 893 TTTCCCAGTCAATGTTTTGACGAGTATTTG 922 >seq544227 Length=641 Score = 84.2 bits (92), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6324 ACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGC 6383 || |||| ||| || || |||||||||||||| || || ||||| ||||| || || Sbjct 229 ACCAAATTTTTTGGATGTGAACTTGGCGCTCAAACTCAAGTTGATTTGAAAAATGACCGA 288 Query 6384 TTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATT 6443 ||||| ||||| || || ||| | ||| | | || || | || | || ||||||| Sbjct 289 TTCATTGTTAATGGCTCACATGATTCTCCTAGACTTCAACAACTATTGGATATCTTTATT 348 Query 6444 CGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||||| |||||| |||||| |||| || || || Sbjct 349 AAGAAGTTTGTCTTGTGTCCAGAATGCCATAATCCAGAAAC 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330855503217554