Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq380849 277 2e-69 seq705227 165 9e-36 seq83784 149 7e-31 seq120769 111 2e-19 seq218873 102 9e-17 seq660234 96.9 4e-15 seq965722 93.3 5e-14 seq303667 93.3 5e-14 seq162926 89.7 6e-13 seq548239 86.0 7e-12 seq210539 82.4 8e-11 >seq380849 Length=1041 Score = 277 bits (306), Expect = 2e-69 Identities = 591/877 (67%), Gaps = 12/877 (1%) Strand=Plus/Plus Query 18685 ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAAT 18744 |||||||||||||| ||||| | | | || |||| || || |||||| || ||| Sbjct 87 ACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAG 146 Query 18745 GGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACA 18804 ||||||||| ||||| | || | ||| |||| | | |||||||| | || Sbjct 147 GGATTTTTTGCATTAAAATAAGCTTCGTTTCCCAATTGACACAACAGTCTATCACCAACG 206 Query 18805 AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCA 18864 ||| ||||| || ||| | | ||||||| || || || | || | ||| Sbjct 207 TATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCA 266 Query 18865 TCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT 18924 | | | ||| || | ||| || || || || |||||| | ||| | ||| Sbjct 267 TTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTTTCT 326 Query 18925 TCATTAGGAGGGTATAGAAGATGTT---TAAACATCAAACATGCAAAATCACAATGTAGT 18981 | | ||| || | | ||| | |||| | ||| |||||||| || ||||| | Sbjct 327 TTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATC 386 Query 18982 CCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttt 19041 || ||||||||||| || ||||| || ||||| | || | | |||||| ||| Sbjct 387 CCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTT 446 Query 19042 tttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAA 19101 || | ||| || ||||| ||||| |||||||| || |||||||| || || |||||| Sbjct 447 TTAATCCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAA 506 Query 19102 GCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCA 19161 || || || | ||||||| |||| ||| | || |||||||| ||| || Sbjct 507 GCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCC 566 Query 19162 GCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCT 19221 ||||| ||||| | ||||| || ||||| | |||||||| | | | | | | Sbjct 567 GCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTT 626 Query 19222 GTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATA 19281 |||||||| || | || || || ||| |||| || ||||| || ||||| || Sbjct 627 CGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATC 686 Query 19282 GCCATCTGAAATCCGTAAAAACATCTTG-CTTCTGTTATCTGTACTTCACTACAAAATCT 19340 || ||||||||| |||||| | ||| || | ||| || ||||| | |||| | Sbjct 687 ATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTAT-TGGACTTCTTTGGAAAACCG 745 Query 19341 TTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTT 19400 ||| || | ||||||||||||||| |||||||| ||||||||||| || || || || Sbjct 746 TTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGA 805 Query 19401 AATAAAAT---GTTTTTCATCTGAGGTTAAT--GTATTCCAATCATTAATATCTTTAGAT 19455 ||||| | ||| || ||| | | ||| | ||||||| || ||| |||| Sbjct 806 TATAAATTTTCGTTCTTTATC--ATTTAAATCATTTTTCCAATGCACGATGTCTGTAGAA 863 Query 19456 AAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATA 19515 ||||| | |||||||| ||||||||| ||| |||| ||||||||||||||||||| Sbjct 864 AAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATG 923 Query 19516 TCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||| ||| |||||||||| | ||||| | ||| ||| Sbjct 924 TCATGATGTTGTATAGGATAAGTAACATACCTACTTT 960 >seq705227 Length=470 Score = 165 bits (182), Expect = 9e-36 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| ||||| | ||||||||| | |||||| |||| Sbjct 316 CCTCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTT 257 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | ||||||||||| | ||||| ||||| || ||||| ||||| || |||||||| | Sbjct 256 TCAACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGG 197 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | ||||||| |||| |||| | | || |||||||| | ||||| || | Sbjct 196 CAACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTG 137 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||||||| |||||||| | ||||| |||| ||| |||||||| Sbjct 136 CCTTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGATA 91 >seq83784 Length=3932 Score = 149 bits (164), Expect = 7e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| |||||||| || || ||||||||||||||||| || || | |||||| |||| Sbjct 3847 ACCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATA 3788 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 |||||||| || || | | | | ||| | | | | ||||||||||||||| ||| Sbjct 3787 AAATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACT 3728 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 |||||| ||||||| || || || |||||||| || ||||| ||||| || ||| |||| Sbjct 3727 TCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATAC 3668 Query 19525 TGTATAGGAAATATAACAAATC 19546 | || || || | |||||||| Sbjct 3667 TCAATGGGGAAGACAACAAATC 3646 >seq120769 Length=3061 Score = 111 bits (122), Expect = 2e-19 Identities = 120/158 (76%), Gaps = 7/158 (4%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAAT-----TCTCTTCATTAGAATTCATTACTCCC 18666 ||||||||| ||||||| | ||| |||| || | || | | ||| || ||| Sbjct 1728 TTAAAAATCGGCATCCAATGTAAATGAATGGGTATCGCCTCCTCCTGA--CATGACACCC 1671 Query 18667 ATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATA 18726 || ||||||||||| | |||||||| ||||| || || |||||||| |||| ||| || Sbjct 1670 ATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTCTAGTGAGATC 1611 Query 18727 CATTCCATAAAATCAAATGGATTTTTTACATTATATAt 18764 ||||||||| ||||||||||||| |||||| ||||| Sbjct 1610 TGTTCCATAAAGTCAAATGGATTTTCTACATTGTATAT 1573 >seq218873 Length=1880 Score = 102 bits (112), Expect = 9e-17 Identities = 342/525 (65%), Gaps = 21/525 (4%) Strand=Plus/Plus Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 |||| || | ||||| ||||| ||||| ||||| | | || ||||| || |||| || Sbjct 459 ATTACTAAAATGTATGATTTCTGCACACAGATTGCTGCTCTTTATAGTCCCTAAATGTTT 518 Query 47978 ATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 ||| || ||| | ||||||| | || ||| ||||| |||| ||||| ||||| Sbjct 519 ATGGTTGGATTTT--TCGTTACATTCATCTTTGAGTAGCATGTAAGGGGTTCCGGTTTCA 576 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA 48095 || || | ||| ||| || ||| | | | ||||||| ||| | ||| Sbjct 577 ATTTGTGCCATAATAATACTTTGCCATATATCTCGGGCCTTTACAACTTGATTGTATTTC 636 Query 48096 TTA------TCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTA 48149 ||| |||| ||||| || |||||||| ||||| ||| | || || || Sbjct 637 TTACTGGGATCATTCTCGTAAGACGTGTATAACTTTTCAAACTCAGCACCGTAGCAATCG 696 Query 48150 TCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTA 48209 ||| || |||||| |||||||||| || | ||| || || || | ||||| Sbjct 697 GATAAACCTTCACATTCGCTAGGACACATTAAAGTCCAGTCTGCACCAGCTCGAACTCTT 756 Query 48210 GTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCA 48269 | ||| | || || | ||| | ||| | || ||||| || || ||| |||||| Sbjct 757 TCAAAAAACAGATTCGGAAGCCATAACGCTGTGAACAAATCTCTGGTCCTT---TCTTCA 813 Query 48270 T-TGCCAC--TATTCCTTTTAAGTTC-AAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 | | || | |||| ||||||| || ||||| | | ||||| || |||||||||||||| Sbjct 814 TCTACCCCCGTATTTTTTTTAAGATCTAAGAACG-CAATTATGTCGGCATGCCATGGTTC 872 Query 48326 TAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT 48385 | | | | ||| || || ||||| |||| |||| | ||| | || Sbjct 873 CAGAAAAAAAACCAAAGGTCCCTTTCTTTTAT---CTCCCTGATTGACGAGTCTTGTCGT 929 Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 ||| ||||||||||| ||| || |||||| |||||||| Sbjct 930 GGAATTAAAAACTCTTAACCGTGGCACTATACCACGAGATATACC 974 >seq660234 Length=515 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 19215 CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATT 19274 ||| | || ||| |||| |||| ||| || || || ||||||||||| |||||||| || Sbjct 274 CTCTTTTGGATCCTTAATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTT 215 Query 19275 TTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACA 19334 || || || ||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 214 CTCCATTGCTATCTGGAATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACT 155 Query 19335 AAATCTTTCGACC 19347 |||||||| ||| Sbjct 154 GAATCTTTCTACC 142 >seq965722 Length=213 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 || ||||| || ||||| ||||| ||||| | ||||| | || | || ||||| || Sbjct 184 TGGGGATTGACGATTTGGAATTCGCCAGACATGACTCTTCTAGTAAAAATGTTACTGGTG 125 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432 |||||||| || ||||||||||| || |||||| ||| || ||||| || ||||| | Sbjct 124 TATGGTTCAATGGATTCATTATTACCCAAAATTGAAGCGGTCGATGCGGTTGGCATACAA 65 Query 47433 GCAACTAATAAGCTATTTCTTACTCCATATT 47463 || |||||| || || | | ||||| || Sbjct 64 GCTGTTAATAAACTGTTGCGGAGTCCATGTT 34 >seq303667 Length=1354 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 136672 ATCTGTAGATAAAGCATTTAAAAAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGA 136731 |||| | || | || |||||||| | ||| |||||||| | |||||| || |||||||| Sbjct 337 ATCTATTGAGCAGGCTTTTAAAAAATGTCCCAATGGAATGTATGCAGAGATGAAATATGA 278 Query 136732 CGGAGAACGTGTACAGGTTCACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACAT 136791 ||||||| | || || ||||| || || ||| | ||||| | | || |||||||| | Sbjct 277 CGGAGAAAGAGTTCAAGTTCATAAAAAGGGAGATAACTTTTCCTACTTCAGTAGAAATTT 218 Query 136792 GAAACCCGT 136800 |||||| || Sbjct 217 GAAACCTGT 209 >seq162926 Length=2426 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||||||| |||||||| || || | | | | | || |||||||| |||| Sbjct 1486 GTATATAACTTTTCAAATTCTTCTCCCCAGCAGTCAGCCAGTCCCTTACATTCATGAGGA 1545 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 ||||||| | |||||| ||| | || ||| | ||||||| | |||||||||||| Sbjct 1546 CACATCAGGGTCCAATCACCATTAGATTCTACCCGCTTCATAAACAAATCTGGTATCCAC 1605 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-TTTAAGTTC 48292 | || ||| || || || | || ||||| || || | ||| | || ||| | Sbjct 1606 ATGGCATAAAACAAGTCTCTTGCCCTGGACTCTTCCTTTCCTGTGTTCTTCTTGCAGTCC 1665 Query 48293 AAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 |||||| || | ||||| |||||||||||||| Sbjct 1666 AAGAAA-TCAAAGATATCTGCATGCCATGGTTC 1697 >seq548239 Length=634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGG-GAC 48412 ||||| |||||||| || | |||||||||||| ||||| |||||||| |||||||| || Sbjct 193 TTATTGCCTCCTTGGTCAACATATCTGGCAGTGTTGTTGTAAACTCTCAACATTGGCAAC 252 Query 48413 AATACCATTTGATATACCATTGGT 48436 ||| |||||||| || ||||| || Sbjct 253 AAT-CCATTTGAAATTCCATTTGT 275 >seq210539 Length=1946 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || |||||||| || | ||| || | ||| || || ||||| || || | ||||||||| Sbjct 1131 TGGAATTCTCCTGACAATACCCTCCTGCTGTAGATGTTACTGGTGTAAGCTTCTATAGAC 1072 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || || || || | || || ||||| || ||||||||||| | || | ||||| || Sbjct 1071 TCGTTGTTACCTAGGATCTGTGCAGTGGAAGCTGTAGGCATTGGAGCTAACAATAAACTG 1012 Query 47448 TTTCTTACTCCAT 47460 || |||| ||||| Sbjct 1011 TTCCTTATTCCAT 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555066040475760