Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq380849 280 2e-70 seq120769 105 8e-18 seq83784 104 3e-17 seq705227 89.7 6e-13 seq123025 86.0 7e-12 >seq380849 Length=1041 Score = 280 bits (310), Expect = 2e-70 Identities = 418/591 (71%), Gaps = 9/591 (2%) Strand=Plus/Plus Query 37164 TTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTA 37223 ||||| || || |||||||| || ||||| | ||||| |||||||| || ||||| || Sbjct 354 TTAAATAACAAGCATGCAAAGTCGCAATGCATCCCTTCGTCTCTACTAATTAATTCGTTG 413 Query 37224 GAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGAT 37283 ||||| |||| | ||| ||||| |||||||||||||| || | ||||| Sbjct 414 CTGGCAGTTAACGCTGGTAATAATCCTCTATTTTTAATCCAAAAAATAGACGCAAAGCTA 473 Query 37284 CCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA 37343 |||||||| |||||||||||||| || ||||| || ||||||||| || ||| | | | Sbjct 474 CCAGAAAAAAAAATACCTTCAACCGCCGCAAAAGCCACAAGACGTTCTCCAAAACTCGCA 533 Query 37344 CTATAATCAGA---AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 | || || ||||||||||| |||| || |||||| ||||| || Sbjct 534 GT---CTCGGACTGTATCCATTTTTTACTCCATTCCGCCTTTTTTTTAATTGTGGGCATA 590 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 ||||| ||||| || || | ||| ||||||| | | |||| | || || | |||||| Sbjct 591 GTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTCGATCTTTAATGTACGACTCAATT 650 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 | |||||||| || || || || ||||| || | |||||| ||||||||| Sbjct 651 AACTGACTATACAACTCCGAATGTATGTTTTCCATCATCACCTGAAATCCATAAAAAACT 710 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 | || || | |||| || || || |||||| | | ||| |||||||||||||| Sbjct 711 TTTGCCTCCAAGTATTGGACTTCTTTGGAAAACCGTTCAACTATATTTTCATTAACTATG 770 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCATTT 37637 |||||||| |||||||| ||||| | ||| | |||||| | || ||| ||||||| Sbjct 771 CCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGATATAAATTTTCGTTCTTTATCATTT 830 Query 37638 GATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAA 37697 | |||||||||| || ||| | || ||||| | || ||||| ||||||||| Sbjct 831 AAATCATTTTTCCAATGCACGATGTCTGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAA 890 Query 37698 CTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGA 37748 || || || | ||||||||| |||| || |||| ||||||||| ||| Sbjct 891 CTAGCTTCTGTCCTTTTATACATGTTCCATATGTCATGATGTTGTATAGGA 941 >seq120769 Length=3061 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || ||||| |||||||||||||| |||| | | || ||||| ||||| |||||||| Sbjct 1680 CATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTC 1621 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATT 36964 |||||| || | ||||||||| ||||||||||| Sbjct 1620 TAGTGAGATCTGTTCCATAAAGTCAAATGGATT 1588 >seq83784 Length=3932 Score = 104 bits (114), Expect = 3e-17 Identities = 157/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| || || ||||||||||||||||||||||| || |||| | |||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 37682 ||| | || |||| | | | ||| | | | | |||||| |||||||||||||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 37683 TCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGT 37742 ||| | ||||| || || ||| || ||||| ||||||| |||| || | Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTCA 3665 Query 37743 ATTGGAAATATTACAAATC-TATCAGATGATTCTTTAAGAAT 37783 || || || | ||||||| | | ||| || ||| || ||| Sbjct 3664 ATGGGGAAGACAACAAATCGTCTAGGATTATCCTTCAACAAT 3623 >seq705227 Length=470 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| || || | || ||||| | ||||| ||||| Sbjct 314 TCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTC 255 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||||||||||| ||||| || || || |||||||| |||||||| || Sbjct 254 AACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCA 195 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 |||| | | | | | || | | ||| |||||||| | | ||| |||||| Sbjct 194 ACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTGCC 135 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 || ||| |||||| | || ||||| || || || ||| Sbjct 134 TTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGA 93 >seq123025 Length=3020 Score = 86.0 bits (94), Expect = 7e-12 Identities = 170/246 (69%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 142601 ACTGTTACAAAATGT---TCAGGATTCAATGATGAAACATTAAAGGAATTACAGT--CAA 142655 || |||||||||||| ||||| | ||||| | || ||| | ||| |||||| || Sbjct 2247 ACGGTTACAAAATGTAGTTCAGGTCTTGATGATAAGACTTTAGAAGAACTACAGTTCCAG 2306 Query 142656 -TTGATATGATAAAAATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAAC 142714 |||| | | || |||| ||| | ||| |||||| |||||| || |||| Sbjct 2307 CTTGAAGTTGTGAAGATCAACAAAGACGTCACCAAAGTACCAAACTGGTTACATGTTAAT 2366 Query 142715 AGTATACATTATCCA-GATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAAT 142773 | | | | ||| |||||| |||| || | |||||| ||| || |||||||||| Sbjct 2367 AAG-TCCCTGGTCCCTGATTTTGTTGTCAAGGACCCAAAAGAATCGCCAATTTGGGAAAT 2425 Query 142774 ATCCGGATATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATT 142833 ||| || |||| ||||||||| | |||||||| ||||||||||| || ||||| Sbjct 2426 TATTGGAGCAGAGTTTAGTAAATCACCAGCCCATACAGCTGATGGGATATCAATCAGATT 2485 Query 142834 TCCTAG 142839 || || Sbjct 2486 CCCCAG 2491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584895559157360