Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq380849 176 7e-39 seq92178 109 8e-19 seq83784 102 1e-16 >seq380849 Length=1041 Score = 176 bits (194), Expect = 7e-39 Identities = 404/608 (66%), Gaps = 5/608 (1%) Strand=Plus/Plus Query 18127 TTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATC 18186 ||| ||||||| || | | | |||| || || ||||| || || | ||||| || Sbjct 335 TTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATCCCTTCGTC 394 Query 18187 TCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCA 18246 ||| ||||||||||| || |||||| | || | || ||||| ||||| | ||| Sbjct 395 TCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTTTTAATCCA 454 Query 18247 AAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAA 18306 ||| || || || || |||| |||||| || ||||| ||||| ||| || || | | Sbjct 455 AAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAAGCCACAAG 514 Query 18307 TCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNN 18366 | ||| ||||||| | | | | |||||||||||| |||||| | | Sbjct 515 ACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCCGCCTTTTT 574 Query 18367 NNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTT-CTTTGGAATCTT 18425 || || ||| | ||||| |||||||| ||| | ||||| |||| || |||| Sbjct 575 TTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTCGA-TCTT 633 Query 18426 TTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCT 18485 | || || | || |||||| | ||||| || ||||||||| ||||||| | || Sbjct 634 TAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATCATCACCT 693 Query 18486 GAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCA 18545 |||| | |||||| | | ||||| ||||| | || | |||| | ||| || | Sbjct 694 GAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGAAAACCGTTCAACTA 753 Query 18546 AATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAAT 18605 ||| ||||||||||| || ||| | ||| ||||| |||||||| | || || | Sbjct 754 TATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGATATAAATT 813 Query 18606 GTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTT 18662 | ||| ||||| || | ||| ||||| | | || ||| | || | ||| | | Sbjct 814 TTCGTTCTTTATCATTTAAATCATTTTTCCAATGCACGATGTCTGTAGAAAAATCCAGCT 873 Query 18663 CTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTT 18722 |||| ||||||||| | ||| | | ||| ||||| || | || || | ||||| Sbjct 874 CTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATGTCATGATGTT 933 Query 18723 GTATAGGA 18730 |||||||| Sbjct 934 GTATAGGA 941 >seq92178 Length=3697 Score = 109 bits (120), Expect = 8e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 155826 CAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGAT 155885 |||||| | | |||||||||||||| ||||| |||||||| || |||| | ||| Sbjct 922 CAAATACTCGTCAAAACATTGACTGGGAAAACGATTACATTGGAGGTCGTGGGGAGTGAC 863 Query 155886 AATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAA 155945 | || ||| || || ||||||| || ||||||||||| || ||| |||||| Sbjct 862 ACGATAGAAAATGTCAAGTCAAAAATACGTGACAAAGAAGGCATTCCGGAAGATCAACAA 803 Query 155946 AGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATA 156005 | || | | ||| || ||||| || || || ||||| || || ||||||||||| Sbjct 802 CGTTTATTCTTTGCTGGAAAGCAACTGGAGGACGGAAGAACCTTGTCTGATTATAATATT 743 Query 156006 TCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 | ||||| || || | ||||| || |||||||| Sbjct 742 TATAAAGAAGCAACTTTACATTTGGTTTTAAGATT 708 >seq83784 Length=3932 Score = 102 bits (112), Expect = 1e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 18541 TACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAAT 18600 |||||| || ||||| || || || ||| || ||| || || |||| |||| | ||| Sbjct 3848 TACCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAAT 3789 Query 18601 GAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAAC 18660 |||||||| || | ||| || ||| || ||| | | | |||||| |||| |||||| Sbjct 3788 AAAATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAAC 3729 Query 18661 TTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTTTATAAATATC 18714 |||||| | |||||| || || | ||| || | ||||||||||| |||| || Sbjct 3728 TTCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTC 3675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722702247634400