Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq92178 114 3e-20 seq227251 109 1e-18 seq705227 104 5e-17 seq83784 102 2e-16 seq687910 87.8 3e-12 >seq92178 Length=3697 Score = 114 bits (126), Expect = 3e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 ||| || ||||||||||| || |||||| | |||||||||||||| || |||| | | || Sbjct 713 TAAAACCAAATGTAAAGTTGCTTCTTTATAAATATTATAATCAGACAAGGTTCTTCCGTC 772 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 |||| ||| || |||||||||| ||| | |||||||| || || |||||||| || Sbjct 773 CTCCAGTTGCTTTCCAGCAAAGAATAAACGTTGTTGATCTTCCGGAATGCCTTCTTTGTC 832 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||||||| || ||||| ||| | || | | || || | ||||| || Sbjct 833 ACGTATTTTTGACTTGACATTTTCTATCGTGTCACTCCCCACGACCTCCAATGTAATCGT 892 Query 192504 TTTACCAGTTAATGTTTT 192521 ||| ||||| |||||||| Sbjct 893 TTTCCCAGTCAATGTTTT 910 >seq227251 Length=1814 Score = 109 bits (120), Expect = 1e-18 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 192295 TTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGA 192353 || ||||||| || ||||| | ||||| || || | ||| | || | || ||| || Sbjct 212 TTCAGTTTAA--ATTCCACCACGTAGACGCAAAACCAGATGGAGTGTGGATTCCTTTTGA 155 Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 || || ||||| || | || | |||| || | |||||| || || ||||||||||| Sbjct 154 -ATGTTGTAATCTGAAAGAGTCCTGCCATCTTCAAGTTGTTTTCCTGCGAAGATTAATCT 96 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||||||||| ||||| || ||||| || ||||| || ||| ||| ||||| || | Sbjct 95 CTGTTGATCTGGTGGAATACCTTCCTTGTCTTGGATCTTAGCTTTAACATTCTCAATGGT 36 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||| || | ||| || |||||||| || ||||| Sbjct 35 ATCCGATGGTTCAACCTCTAGAGTGATTGTTTT 3 >seq705227 Length=470 Score = 104 bits (114), Expect = 5e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 49865 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 49924 |||||| || || || | || ||||| | |||||||||||| | ||| ||||||| ||| Sbjct 297 TTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTCAACCAGAATATTGCTGC 238 Query 49925 AAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCA-A 49983 |||||| | ||| || ||||| || || ||| ||||| || | | |||| || || | Sbjct 237 AAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCAACAACTCTTTCTGCATA 178 Query 49984 ACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAG 50043 || |||| | || |||||| || || ||||| ||||| || ||||| | | | | Sbjct 177 TGATGCATTTGT-TTCATTTATCCATTTAATGGCCCAGTCTGCCTTCTTTTTCACACATG 119 Query 50044 GTATATTTTCTATAGCTTTAAATA 50067 ||| | | || ||||| || |||| Sbjct 118 GTAAAGTCTCAATAGCATTGAATA 95 >seq83784 Length=3932 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 50208 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATA 50267 || || || ||| |||||| |||||| ||||| ||||| || | || | | |||| Sbjct 3847 ACCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATA 3788 Query 50268 AAATGTTTTTCATTATCTTTTAAATTTTCCCA-AGATTCAAGATCGTTTGATAAATCTAC 50326 |||||||| || | |||||| | | ||||| || | ||||| || |||||||| || Sbjct 3787 AAATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAAT-GAGATCTTTAGATAAATCAAC 3729 Query 50327 TTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATG 50386 |||||| |||||| || || ||| | | ||| || ||||||| | || ||| || Sbjct 3728 TTCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATA 3669 Query 50387 TTCAATGGGAAATAGTACATATCGTTTAGTATT 50419 |||||||| || | ||| ||||| ||| ||| Sbjct 3668 CTCAATGGGGAAGACAACAAATCGTCTAGGATT 3636 >seq687910 Length=490 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| || ||||||||||| | ||| | |||| || || || || |||||||| Sbjct 149 CCACCCCTCAGACGTAATACAAGATGGAGGGTAGATTCCTTCTGAATGTTGTAATCAGAG 90 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||| | |||| ||||| || ||||| |||||||| |||||||| ||||| || || Sbjct 89 AGGGTTCTTCCATCCTCCAACTGCTTACCGGCAAAGATCAATCTCTGCTGATCTGGGGGG 30 Query 192430 ATTCCT 192435 || ||| Sbjct 29 ATACCT 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 971836909740900