Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq92178 116 7e-21 seq705227 107 3e-18 seq83784 107 3e-18 seq227251 96.9 6e-15 >seq92178 Length=3697 Score = 116 bits (128), Expect = 7e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171848 TCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGA 171907 || || || ||| || ||||||||||| || |||||| ||||||||||||| || || | Sbjct 704 TCGAAATCTTAAAACCAAATGTAAAGTTGCTTCTTTATAAATATTATAATCAGACAAGGT 763 Query 171908 TCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCC 171967 || | |||| |||| ||| || |||||||| | ||| | ||||| || || || || Sbjct 764 TCTTCCGTCCTCCAGTTGCTTTCCAGCAAAGAATAAACGTTGTTGATCTTCCGGAATGCC 823 Query 171968 TTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAG 172027 |||||| || ||||||| || ||||| ||| || || | | || || | Sbjct 824 TTCTTTGTCACGTATTTTTGACTTGACATTTTCTATCGTGTCACTCCCCACGACCTCCAA 883 Query 172028 AGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| ||||| ||||| |||||||| | || ||| || Sbjct 884 TGTAATCGTTTTCCCAGTCAATGTTTTGACGAGTATTTG 922 >seq705227 Length=470 Score = 107 bits (118), Expect = 3e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 39167 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 39226 |||||| || || || | || ||||| | |||||||||||| | ||| ||||||| ||| Sbjct 297 TTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTCAACCAGAATATTGCTGC 238 Query 39227 AAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCA-A 39285 |||||| | ||| || ||||| || || ||| ||||| || | | |||| || || | Sbjct 237 AAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCAACAACTCTTTCTGCATA 178 Query 39286 ACATTAATT--TATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGA 39343 || ||| | |||| | ||||| || |||||||| ||||| || ||||| | | | Sbjct 177 TGATGCATTTGTTTCATTT---ATCCATTTAATGGCCCAGTCTGCCTTCTTTTTCACACA 121 Query 39344 AGGTATATTTTCTATAGCTTTAAATA 39369 |||| | | || ||||| || |||| Sbjct 120 TGGTAAAGTCTCAATAGCATTGAATA 95 >seq83784 Length=3932 Score = 107 bits (118), Expect = 3e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39510 ACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACATATTTAATA 39569 || || || ||| |||||| |||||| ||||| ||||| || | |||| | |||| Sbjct 3847 ACCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATA 3788 Query 39570 AAATGTTTTTCATTATCTTTTAAATTTTCCCA-AGATTCAAGATCGTTTGATAAATCTAC 39628 |||||||| || | |||||| | | ||||| || | ||||| || |||||||| || Sbjct 3787 AAATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAAT-GAGATCTTTAGATAAATCAAC 3729 Query 39629 TTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATACATTTGATATATATCAAAATG 39688 |||||| |||||| || || ||| | | ||| || ||||||| | || ||| || Sbjct 3728 TTCTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATA 3669 Query 39689 TTCAATGGGAAATAACACATATCGTTTAGTATT 39721 |||||||| || | ||| ||||| ||| ||| Sbjct 3668 CTCAATGGGGAAGACAACAAATCGTCTAGGATT 3636 >seq227251 Length=1814 Score = 96.9 bits (106), Expect = 6e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||| ||||| | || || || || | ||| | || | || || ||| || ||||| Sbjct 203 AATTCCACCACGTAGACGCAAAACCAGATGGAGTGTGGATTCCTTTTGAATGTTGTAATC 144 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||| | || | | || || | |||||| || || || |||||||||||||| || || Sbjct 143 TGAAAGAGTCCTGCCATCTTCAAGTTGTTTTCCTGCGAAGATTAATCTCTGTTGATCTGG 84 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| || ||||| || ||||| || ||| ||| ||||| || ||||| || | ||| Sbjct 83 TGGAATACCTTCCTTGTCTTGGATCTTAGCTTTAACATTCTCAATGGTATCCGATGGTTC 24 Query 172019 TACTTCTAGAGTAATGGTTTT 172039 || |||||||| || ||||| Sbjct 23 AACCTCTAGAGTGATTGTTTT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893795392657200