Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq227251 145 1e-29 seq92178 122 2e-22 seq40568 111 3e-19 seq148027 102 2e-16 seq203241 100 6e-16 seq152430 96.9 7e-15 seq141001 89.7 1e-12 >seq227251 Length=1814 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| ||| | || || || ||||| || || || || ||||| || ||| | || || Sbjct 188 ACGCAAAACCAGATGGAGTGTGGATTCCTTTTGAATGTTGTAATCTGAAAGAGTCCTGCC 129 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||||||||| || ||||||| ||| ||||||||||| || || |||||||| Sbjct 128 ATCTTCAAGTTGTTTTCCTGCGAAGATTAATCTCTGTTGATCTGGTGGAATACCTTCCTT 69 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||| ||||| ||||| ||||| ||||| ||||| || || | ||| || Sbjct 68 GTCTTGGATCTTAGCTTTAACATTCTCAATGGTATCCGATGGTTCAACCTCTAGAGTGAT 9 Query 82775 CGTCTTGC 82782 || |||| Sbjct 8 TGTTTTGC 1 >seq92178 Length=3697 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 ||| || || | ||| | |||||| | |||||||||||||| | |||| ||||| || Sbjct 716 AACCAAATGTAAAGTTGCTTCTTTATAAATATTATAATCAGACAAGGTTCTTCCGTCCTC 775 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 ||||| ||||||||||||| || | |||||||||| || || ||||| || || | Sbjct 776 CAGTTGCTTTCCAGCAAAGAATAAACGTTGTTGATCTTCCGGAATGCCTTCTTTGTCACG 835 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || |||| || |||||||| ||||| ||| | | || ||||| || ||||| || Sbjct 836 TATTTTTGACTTGACATTTTCTATCGTGTCACTCCCCACGACCTCCAATGTAATCGTTTT 895 Query 82781 GCCTGTCAACGTCTTTACAAATATCTG 82807 || ||||| || || || | ||| || Sbjct 896 CCCAGTCAATGTTTTGACGAGTATTTG 922 >seq40568 Length=5963 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 |||| ||||||||||| ||||| || | ||||||| || ||||| |||||| || | Sbjct 3975 TAGGCTGTATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 4034 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCAT 198633 |||| || || | || ||||||||||| |||| ||| | |||||||||||||||||| | Sbjct 4035 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTGCTT 4094 Query 198634 TTATACAAAAATACAG 198649 || | |||||| || Sbjct 4095 TTGTTAGAAAATATAG 4110 >seq148027 Length=2619 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 |||| || |||||||| ||||| || | ||||||| || ||||| |||||| || | Sbjct 359 TAGGCTGCATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 300 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCAT 198633 |||| || || | || ||||||||||| |||| ||| | |||||||||||||||||| | Sbjct 299 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTGCTT 240 Query 198634 T 198634 | Sbjct 239 T 239 >seq203241 Length=2009 Score = 100 bits (110), Expect = 6e-16 Identities = 128/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||||| ||||||||||||| ||| | || || || ||||| |||||||| | Sbjct 1099 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 1158 Query 60199 GTTTTTCATA---CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCA 60255 ||||| || | || |||||| ||| || |||||||| ||||| ||||||||||| Sbjct 1159 ATTTTTTGTATTGCGTAAGAAAAA---TAACCAAGTTAGTTTCTTACATGTATATCATCA 1215 Query 60256 TTTTACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 | | |||||||| | || | ||| | || |||||||| | || || || ||| Sbjct 1216 TGCTTCTATGTTTCCCCTATGGTGGATTGGAGTTAAATGGGTAGCTGGTGGACAA 1270 >seq152430 Length=2559 Score = 96.9 bits (106), Expect = 7e-15 Identities = 127/175 (73%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||||| ||||||||||||| ||| | || || || ||||| |||||||| | Sbjct 2419 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 2360 Query 60199 GTTTTTCATACT---TAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCA 60255 ||||| || | || |||||| ||| || ||||| || ||||| ||||||||||| Sbjct 2359 ATTTTTTGTATTGCGTAAGAAAAA---TAACCAAGTTAGCTTCTTACATGTATATCATCA 2303 Query 60256 TTTTACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 | | |||||||| | || | ||| | || |||||||| | || || || ||| Sbjct 2302 TGCTTCTATGTTTCCCCTATGGTGGATCGGAGTTAAATGGGTAGCTGGTGGACAA 2248 >seq141001 Length=2723 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||||||||| ||||| || |||||||| || || ||| || || || Sbjct 2119 ATACCTTCCTTATCTTGAATTTTTGCCTTGACATTTTCTATGGTGTCAGAGGGCTCGACC 2178 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 2179 TCTAGGGTTATGGTCTTCCCTGTTAATGTTTTAACAAAGATCTGCAT 2225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 969218178071226