Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq152430 95.1 2e-14 seq203241 89.7 9e-13 seq40568 89.7 9e-13 seq148027 84.2 4e-11 >seq152430 Length=2559 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||||| ||||||||||||| ||| | || || | ||||| ||||||||| | Sbjct 2419 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 2360 Query 58429 GTTTTTCATACT---TAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCA 58485 ||||| || | || |||||| ||| || |||||||| |||| ||||||||||| Sbjct 2359 ATTTTTTGTATTGCGTAAGAAAAA---TAACCAAGTTAGCTTCTTACATGTATATCATCA 2303 Query 58486 TTTTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | | |||||||| | || | ||| | || |||||||| | || || || || Sbjct 2302 TGCTTCTATGTTTCCCCTATGGTGGATCGGAGTTAAATGGGTAGCTGGTGGACA 2249 >seq203241 Length=2009 Score = 89.7 bits (98), Expect = 9e-13 Identities = 125/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 |||||||| ||||||||||||| ||| | || || | ||||| ||||||||| | Sbjct 1099 GATAGCCAAGGCATTATGGTGGTTTTATTTCTCAAAGTGTTTAGAAATGTTAGATACAAT 1158 Query 58429 GTTTTTCATA---CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCA 58485 ||||| || | || |||||| ||| || ||||| || |||| ||||||||||| Sbjct 1159 ATTTTTTGTATTGCGTAAGAAAAA---TAACCAAGTTAGTTTCTTACATGTATATCATCA 1215 Query 58486 TTTTACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 | | |||||||| | || | ||| | || |||||||| | || || || || Sbjct 1216 TGCTTCTATGTTTCCCCTATGGTGGATTGGAGTTAAATGGGTAGCTGGTGGACA 1269 >seq40568 Length=5963 Score = 89.7 bits (98), Expect = 9e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 |||| ||||||||||| ||||| || | || ||| || ||||| |||||| || | Sbjct 3975 TAGGCTGTATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 4034 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCTACAT 183316 ||||||| || | || ||||||||||| ||| ||| | ||||||||||||||| | | Sbjct 4035 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCTGCTT 4094 Query 183317 TT 183318 || Sbjct 4095 TT 4096 >seq148027 Length=2619 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 |||| || |||||||| ||||| || | || ||| || ||||| |||||| || | Sbjct 359 TAGGCTGCATGTGGTCAATTTGTGGTATCCATGATCAAGGATGGAAGGAAAGAGAAATTT 300 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGCT 183312 ||||||| || | || ||||||||||| ||| ||| | ||||||||||||||| Sbjct 299 TTGGAAAAATTCGCTACATGAATTATGATGGTTGTAAAAGAAAATTTGATGTTGCT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 892092202978240