Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq380849 271 1e-67 seq83784 150 2e-31 seq965722 109 7e-19 seq31841 102 1e-16 seq218873 98.7 1e-15 seq707336 96.9 5e-15 seq179164 93.3 6e-14 seq303667 91.5 2e-13 seq154428 89.7 7e-13 seq162926 86.0 8e-12 seq114174 86.0 8e-12 >seq380849 Length=1041 Score = 271 bits (300), Expect = 1e-67 Identities = 587/872 (67%), Gaps = 17/872 (2%) Strand=Plus/Plus Query 39346 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||| || |||||||| | | |||| || | || || ||||||||||| ||| ||||| Sbjct 92 TTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAGGGATT 151 Query 39406 AGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTC 39465 |||||||| | | || ||| |||| | | || |||||| |||| |||| Sbjct 152 TTTTGCATTAAAATAAGCTTCGTTTCCCAATTGACACAACAGTCTATCACCAACGTATTC 211 Query 39466 TATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGT 39525 ||| || ||| ||| ||| ||||||| || || | | ||| | ||| | | Sbjct 212 TATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCATTAAT 271 Query 39526 TAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACT 39585 || ||| || ||||| || ||| ||| || || || | || || | | Sbjct 272 TAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTTTCTTTAGA 331 Query 39586 CGGTGGATGCAATAAATGTT---TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTC 39642 ||| | | |||||| | |||| | ||||| || ||||| ||||| | || || Sbjct 332 AGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATCCCTTC 391 Query 39643 ATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAG 39702 |||||||||||||||||||| || | | || | || || | ||||| | Sbjct 392 GTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTTTTAAT 451 Query 39703 CCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 |||||| || | ||||| |||||||| || || ||||| || || ||||| || || Sbjct 452 CCAAAAAATAGACGCAAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAAGCCAC 511 Query 39763 AAGTCTCTCTCCGTAACTTGTA---TCATTATGTATCCACTTCTGTGCCCAATCAGCTTT 39819 ||| | ||||| |||| | | || |||||||| || | ||| || || || Sbjct 512 AAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCCGCCTT 571 Query 39820 CTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATC 39879 || || | ||||| |||||||| |||||||| | | | | ||||| | | ||| Sbjct 572 TTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTCGATC 631 Query 39880 TTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCAT 39939 ||||| || | || |||||| ||||||||| || ||||| |||||||| ||| || Sbjct 632 TTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATCATCAC 691 Query 39940 CTGAAATCCGTAAAAACATCTTGCTTC--AGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 ||||||||| |||||| | |||| || |||| ||| || ||| |||| | ||| Sbjct 692 CTGAAATCCATAAAAAACTTTTGCCTCCAAGTA--TTGGACTTCTTTGGAAAACCGTTCA 749 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 | | ||||||||| ||||| |||||||| || |||||||| ||||| || || ||| Sbjct 750 ACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGATATA 809 Query 40058 AAATATTTTTC---ATCGGGTGTCAAT--TTATTCCAGTCATTGATATCTTTTGATATAT 40112 || | | ||| ||| | | ||| || ||||| | ||| ||| | || | || Sbjct 810 AATTTTCGTTCTTTATCA--TTTAAATCATTTTTCCAATGCACGATGTCTGTAGAAAAAT 867 Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCAC 40172 | | |||||| | |||||||| || |||| | |||| |||||||||||||| ||| Sbjct 868 CCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATGTCAT 927 Query 40173 GATATTGTATTGGAAAAATAACAAATCTATTT 40204 ||| |||||| ||| || ||||| | ||| || Sbjct 928 GATGTTGTATAGGATAAGTAACATACCTACTT 959 >seq83784 Length=3932 Score = 150 bits (166), Expect = 2e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| |||||||| || || ||||||||||| ||||| || |||| |||||| ||||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAA 3787 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| ||| || || | ||| | ||||| | ||| |||||| |||| ||| |||| Sbjct 3786 AATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTT 3727 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 ||||||||||||| || || || ||||| || |||||||| ||||| || ||| |||| | Sbjct 3726 CTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACT 3667 Query 40179 GTATTGGAAAAATAACAAATC 40199 || || || | |||||||| Sbjct 3666 CAATGGGGAAGACAACAAATC 3646 >seq965722 Length=213 Score = 109 bits (120), Expect = 7e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68704 TGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTA 68763 || ||||| || ||||| ||||| ||||| | ||||| | ||| |||| |||||||| Sbjct 184 TGGGGATTGACGATTTGGAATTCGCCAGACATGACTCTTCTAGTAAAAATGTTACTGGTG 125 Query 68764 TATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGT 68823 |||||||| | ||||||||||| |||| |||| ||| || ||||| ||||||||| Sbjct 124 TATGGTTCAATGGATTCATTATTACCCAAAATTGAAGCGGTCGATGCGGTTGGCATACAA 65 Query 68824 GCCACCAATAAACTATTTCTAAGACCATGT 68853 || |||||||| || | || |||||| Sbjct 64 GCTGTTAATAAACTGTTGCGGAGTCCATGT 35 >seq31841 Length=6731 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 163300 ATTAAAATTAGTAAGGATCCaaaaaaaGTACCAGAGTGGTTGGTAGTTAATAA-AATCTA 163358 || ||||| ||||| ||| | |||||| || | |||||| || || || ||| || Sbjct 2915 ATCAAAATCAGTAAAGATGCTTTAAAAGTCCCCAACTGGTTGAATGTGAACAAGAATTTA 2856 Query 163359 TATTCCAGATTTTGTAGCAGAGGATCCAAAACAATCTCCTATCTGGGAAATTTCAGGAGC 163418 ||||| || ||||| | | || || ||| | || || |||||||||||| ||||| Sbjct 2855 -ATTCCTGACTTTGTGGTCAAAGACCCGAAAAAGTCACCAATCTGGGAAATTATGGGAGC 2797 Query 163419 TGAGTTTACTTCATCCAAATCTCATACAGCAAATGGAATATCCATTAGATTTCCTAGATT 163478 ||||||| | ||| | |||||||| |||||||||| || ||||||| ||| | Sbjct 2796 AGAGTTTAGTCAATCTTCTGCCCATACAGCTGATGGAATATCAATACGATTTCCAAGAAT 2737 Query 163479 TACTAGGATCAGAAATGATAAAACGTGG 163506 | ||| ||||| | |||||||| ||| Sbjct 2736 TGCTAAAGTCAGAGACGATAAAACTTGG 2709 >seq218873 Length=1880 Score = 98.7 bits (108), Expect = 1e-15 Identities = 195/287 (68%), Gaps = 9/287 (3%) Strand=Plus/Plus Query 69552 ACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAG 69611 |||||| | |||||||| || | ||| | || || | ||||| || | ||| || Sbjct 708 ACATTCGCTAGGACACATTAAAGTCCAGTCTGCACCAGCTCGAACTCTTTCAAAAAACAG 767 Query 69612 ATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTT---CCTGT 69668 || |||| ||| | ||| | || | ||||||||| || |||||||| | || || Sbjct 768 ATTCGGAAGCCATAACGCTGTGAACAAATCTCTGGTCCT---TTCTTCATCTACCCCCGT 824 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 ||||||||||||||| | ||| | || || || | |||||||||||| ||| | | | Sbjct 825 ATTTTTTTTAAGATCTAAGAACGCAATTATGTCGGCATGCCATGGTTCCAGAAAAAAAAC 884 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 || |||| || ||||| ||||||||| | | ||| | ||| |||| | || Sbjct 885 CAAAGGTCCCTTTCTTTTAT---CTCCCTGATTGACGAGTCTTGTCGTGGAATTAAAAAC 941 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAA 69835 ||| | | || | |||||| |||| |||| | ||| | |||| Sbjct 942 TCTTAACCGTGGCACTATACCACGAGATATACCGTCTGTATCGGAAA 988 >seq707336 Length=468 Score = 96.9 bits (106), Expect = 5e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 163324 aaaGTACCAGAGTGGTTGGTAGTTAATAAAATCTATATTCCAGATTTTGTAGCAGAGGAT 163383 ||||||||| | ||||| |||||||| | | || |||||||| | |||| Sbjct 442 AAAGTACCAAACTGGTTACATGTTAATAAGTCCCTGGTCCCTGATTTTGTTGTCAAGGAC 383 Query 163384 CCAAAACAATCTCCTATCTGGGAAATTTCAGGAGCTGAGTTTACTTCATCCAAATCTCAT 163443 |||| | |||| || || ||||||||| ||| || ||||||| | ||| | | ||| Sbjct 382 CCAAGAGAATCGCCAATTTGGGAAATTATAGGGGCAGAGTTTAGTAAATCTCCAGCCCAT 323 Query 163444 ACAGCAAATGGAATATCCATTAGATTTCCTAGATTTACTAGGATCAGAAATGATAAAACG 163503 ||||| |||| ||||| ||||||||||| || || || | ||| |||||||||| Sbjct 322 ACAGCTGATGGGATATCGATTAGATTTCCCAGGATTGCTGAAGTTAGAGATGATAAAACA 263 Query 163504 TGGAAA 163509 ||| || Sbjct 262 TGGGAA 257 >seq179164 Length=2243 Score = 93.3 bits (102), Expect = 6e-14 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 68932 CCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCA 68991 || ||||| || ||| || || ||||||||||| | ||| | || ||||| ||| Sbjct 1934 CCTTTACTGACAGGTGAGCCTTTGTATGTTTCATATGCTCCCAATTTCTCTGCTAGATCA 1875 Query 68992 CAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 69051 ||||| || || ||||| | || || || || || || || | | || || | || Sbjct 1874 CAACTGGCATCCAATGCTGCATAGTAGATAGTGTCAAAGATTTCCCGGTTCAGTTTCTGG 1815 Query 69052 GCTTCTAGACTATCGAATGGATAATGTAA--AAGAATAAATGCATCTGCCAATCCCTGAA 69109 || ||| ||| || ||||| ||| | | |||| | ||||||||||| | |||||| | Sbjct 1814 GCCTCTTCACTCTCAAATGGG-AATCTCATCAAGA-TGAATGCATCTGCTAGTCCCTGGA 1757 Query 69110 CCCCAATACCGATAGGTCTATGTC 69133 | |||||||| |||||||| |||| Sbjct 1756 CTCCAATACCAATAGGTCTGTGTC 1733 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 69154 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTA 69213 || |||| ||| ||||| || | ||||| || ||||||||||| || || | ||| | Sbjct 1106 TCAGGAACAGGGTAATAGTTGACTTCTATGATCTTATTAAGATTCCGTACAATGACTCTG 1047 Query 69214 ACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGT 69270 ||| ||||||||| ||| |||||| | ||| | ||||| ||||||||| | Sbjct 1046 GTCACCATCTTTAGTTTCTCAAAGTCAAATGTTTTATCTGGTTTAACATACATATTCAAT 987 Query 69271 GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 |||| ||||| | |||||| ||||| |||| | |||| Sbjct 986 GCTATGGATGCCAAATTACACACTGCAACCTGAAAAGAA 948 >seq303667 Length=1354 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 162545 AGGCATTTAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGATGGTGAACGAG 162604 |||| |||||||||| ||| ||| |||| |||||| | |||||||| || ||| ||| Sbjct 326 AGGCTTTTAAAAAATGTCCCAATGGAATGTATGCAGAGATGAAATATGACGGAGAAAGAG 267 Query 162605 TGCAAGTTCATAAAAACAATAACAAGTTTGCGTTCTTTAGTAGAAACATGAAACCCGTTT 162664 | |||||||||||||| | || ||| | | ||| |||||||| ||||||| ||| Sbjct 266 TTCAAGTTCATAAAAAGGGAGATAACTTTTCCTACTTCAGTAGAAATTTGAAACCTGTTC 207 Query 162665 TACAACACAAAGT 162677 | | ||||| || Sbjct 206 TGGATCACAAGGT 194 >seq154428 Length=2533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || |||||||| | ||||||||||| || || || |||||||||||||| ||| || Sbjct 1279 ATTTCTGTACACAAGTTACTACATTTAATGGTTCCTAGATTTTGCTGATTTGACTTCCTG 1220 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||| |||||||| | || | || ||||||||||| | |||||||| || || Sbjct 1219 TTACAGTGATCCTTGTATAACATGTAAGGGGTACCAGTTTCTGTTTGAGATTCTATGAT 1161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Minus Query 69154 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTA 69213 || |||| ||| ||||| || | ||||| || ||||||||||| || || | ||| | Sbjct 2166 TCAGGAACAGGGTAATAGTTGACTTCTATGATCTTATTAAGATTCCGTACAATGACTCTG 2107 Query 69214 ACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATC---TATAACAAACATATTCAGT 69270 ||| ||||||||| ||| |||||| | ||| | ||||| ||||||||| | Sbjct 2106 GTCACCATCTTTAGTTTCTCAAAGTCAAATGTTTTATCTGGTTTAACATACATATTCAAT 2047 Query 69271 GCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 |||| ||||| | |||||| ||||| |||| | |||| Sbjct 2046 GCTATTGATGCCAAATTACACACTGCAACCTGAAAAGAA 2008 >seq162926 Length=2426 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 69504 TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGG 69563 |||||||| | ||| ||||| |||||||| ||| ||| ||| |||||||| || Sbjct 1485 TGTATATAACTTTTCAAATTCTTCTCCCCAGCAGTCAGCCAGTCCCTTACATTCATGAGG 1544 Query 69564 ACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 |||||||| | ||| || ||| | | || || |||||||| | ||| || ||||| Sbjct 1545 ACACATCAGGGTCCAATCACCATTAGATTCTACCCGCTTCATAAACAAATCTGGTATCCA 1604 Query 69624 AAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA-AGAT 69682 | || ||| | ||||| | || ||||| |||||||| || || || || Sbjct 1605 CATGGCATAAAACAAGTCTCTTGCCCTGGACTCTTCCTTTCCTGTGTTCTTCTTGCAGTC 1664 Query 69683 CGAGAAACTCCATAATATCAGAATGCCATGGTTC 69716 | ||||| || | ||||| | |||||||||||| Sbjct 1665 CAAGAAA-TCAAAGATATCTGCATGCCATGGTTC 1697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || |||||||| | ||||||||||| || || || |||||||| ||||| ||| || Sbjct 113 ATTTCTGTACACAAGTTACTACATTTAATGGTTCCTAGATTTTGTTGATTTGACTTCCTG 172 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 |||||| |||||||| | || | || ||||||||||| | |||||||| || || Sbjct 173 TTACAGTGATCCTTGTATAACATGTATGGTGTACCAGTTTCTGTTTGAGATTCTATGAT 231 >seq114174 Length=3188 Score = 86.0 bits (94), Expect = 8e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||| | ||| |||||||||||||| |||||||| || || |||||||| || || Sbjct 1618 CACTAAAGACTTTCTTTGTTTCCTTGTGCAAATTTGAGATAGCAATTCTGGCAGCAAGTT 1559 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||| || ||||||| || || ||||| || |||| ||||| | | || | Sbjct 1558 GGGCATAATCTGGATGTTTGGTTGTCATGGTAGCGGCAGTTTCGGCAGCCAGATTGTCCA 1499 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCA 70498 ||| | ||| || || || ||||| || | ||||| |||| Sbjct 1498 GTTCCACAGTGGTGACACCTGGATATAATCCATTTATAACCTTCA 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 678302399435760