Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq380849 232 5e-56 seq83784 122 7e-23 seq705227 105 5e-18 seq120769 91.5 1e-13 >seq380849 Length=1041 Score = 232 bits (256), Expect = 5e-56 Identities = 406/588 (69%), Gaps = 10/588 (2%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||| || ||| |||||||||||||| | ||||| |||| || | || |||||||| Sbjct 941 TCCTATACAACATCATGACATATGGAACATGTATAAAAGGACAGAAGCTAGTTTTTGGAC 882 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGAT---TGCATTAAAACCACA 43827 | ||||| | ||||| ||| |||| | | ||||||| || ||||| | Sbjct 881 GGTTGAAGAGCTGGATTTTTCTACAGACATCGTGCATTGGAAAAATGATTTAAATGATAA 822 Query 43828 AGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAA 43887 |||| | | ||||||||| |||||||| |||||||| || || || || ||||| || Sbjct 821 AGAACGAAAATTTATATCTCACGTTTTGGCTTTTTTTGCAGCCAGTGATGGCATAGTTAA 762 Query 43888 TGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTA 43947 ||||||| | ||| |||||| | ||||||| |||| || ||| | |||||| Sbjct 761 TGAAAATATAGTTGAACGGTTTTCCAAAGAAGTCCAATACTTGGAGGCAAAAGTTTTTTA 702 Query 43948 TGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATAC 44007 ||| ||||| | || ||||| || |||||||| |||| |||| | || || | Sbjct 701 TGGATTTCAGGTGATGATGGAAAACATACATTCGGAGTTGTATAGTCAGTTAATTGAGTC 642 Query 44008 GTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGC 44067 |||||| |||||| | | | || | || |||||||| |||||||| | || | Sbjct 641 GTACATTAAAGATCGAAAGCAAAAAAAATTTTTATTTAATGCAATAGAAACTATGCCCAC 582 Query 44068 GATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGG 44124 |||||| | || || || ||| ||||||||| | || | | | |||||| Sbjct 581 AATTAAAAAAAAGGCGGAATGGAGTAAAAAATGGATACAGTCCGAGACTGCGAGTTTTGG 522 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGC 44184 |||||| ||||| || ||||| | || ||||| ||||| ||||| || |||||| | Sbjct 521 AGAACGTCTTGTGGCTTTTGCGGCGGTTGAAGGTATTTTTTTTTCTGGTAGCTTTGCGTC 462 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCA--AATGAGTTA 44242 || |||||| | || || |||| || | || | ||| || | || || || ||| Sbjct 461 TATTTTTTGGATTAAAAATAGAGGATTATTACCAGCGTTAAC--TGCCAGCAACGAATTA 404 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTT 44290 || ||| | || ||||| | |||||||| ||||| ||||||||| || Sbjct 403 ATTAGTAGAGACGAAGGGATGCATTGCGACTTTGCATGCTTGTTATTT 356 >seq83784 Length=3932 Score = 122 bits (134), Expect = 7e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| || || || ||| | ||||||||||| ||| |||||||||| |||||| | || Sbjct 3648 TTTGTTGTCTTCCCCATTGAGTATCATGACATTTGGAAAATGTACAAGAAAGCAGAAGCC 3707 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || |||||||| |||||||||||||| ||||||| | || ||| || | Sbjct 3708 TCCTTCTGGACAGCTGAAGAAGTTGATTTATCTAAAGATCTCATTCACTGGGACGCTCTG 3767 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| | || ||||||||||| || || |||| || ||||| || || || || Sbjct 3768 AAAGATGAGGAGAAACATTTTATTTCACATGTCCTGGCTTTCTTTGCAGCTAGTGATGGC 3827 Query 43880 ATAGTCAATGAAAATTTGGT 43899 || || |||||||| ||||| Sbjct 3828 ATTGTAAATGAAAACTTGGT 3847 >seq705227 Length=470 Score = 105 bits (116), Expect = 5e-18 Identities = 135/183 (74%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATG 44100 || ||||| || || || |||| || | | ||| | || |||||||||||| ||||||| Sbjct 97 TTCAATGCTATTGAGACTTTACCATGTG-TGAAAAAGAAGGCAGACTGGGCCATTAAATG 155 Query 44101 GATAAAT---TCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 ||||||| |||||| || | || |||| || |||| || ||||||| ||| ||||| Sbjct 156 GATAAATGAAACAAATGCATCATATGCAGAAAGAGTTGTTGCCTTTGCAGCTGTTGAAGG 215 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || || || || || ||||| || ||||| ||||| || || |||| | ||||| Sbjct 216 GATATTTTTCTCTGGCAGTTTTGCAGCAATATTCTGGTTGAAAAAGAGAGGAATTATGCC 275 Query 44218 TGG 44220 ||| Sbjct 276 TGG 278 >seq120769 Length=3061 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 44488 TGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTT 44547 |||| |||| || ||||| ||||||||| | || || | ||||| |||||||||||||| Sbjct 1581 TGTAGAAAATCCATTTGACTTTATGGAACAGATCTCACTAGAAGGAAAAACAAACTTTTT 1640 Query 44548 TGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 ||| ||| | || ||||||||||| ||||| |||||| Sbjct 1641 TGAGAAAAGAGTAGGAGAATATCAAAAGATGGGTGTCATG 1680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 392600699115670