Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq380849 251 1e-61 seq83784 138 2e-27 seq179164 111 2e-19 seq120769 100 4e-16 seq303667 98.7 1e-15 seq705227 96.9 5e-15 seq162926 93.3 6e-14 seq253853 91.5 2e-13 seq123025 84.2 3e-11 >seq380849 Length=1041 Score = 251 bits (278), Expect = 1e-61 Identities = 584/874 (67%), Gaps = 21/874 (2%) Strand=Plus/Plus Query 47870 TTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 ||| || |||||||| | | |||| || | || || |||||||| || ||| ||||| Sbjct 92 TTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAAGGGATT 151 Query 47930 AACTGCATTA---TAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAA 47986 ||||||| ||| || || ||| |||| | | ||||||||| ||||| | Sbjct 152 TTTTGCATTAAAATAAGCTTCGTT---TCCCAATTGACACAACAGTCTATCACCAACGTA 208 Query 47987 TTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTC 48046 ||||||||| || ||| ||| ||||||| || || | | ||| | ||| | Sbjct 209 TTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAAAGCATT 268 Query 48047 CGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTACCGTTTCCTC 48106 | | ||| || | ||| || | | ||||| | || || | || ||||| | Sbjct 269 AATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATCTCGAACGGTTTCTTT 328 Query 48107 ACTTGGTGGATACAACAAATGTT---TAAACATTAAACATGCAAAATCACAATGAAGACC 48163 | ||| | | ||||| | |||| | || |||||||| || ||||| | || Sbjct 329 AGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAATGCATCCC 388 Query 48164 TTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTT 48223 ||| |||||||||||||||||||| || | | || | || ||| | ||||| Sbjct 389 TTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCTCTATTTTT 448 Query 48224 GAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACGGCCGCAAATG 48282 | |||||| || | ||| |||| | |||||||| || || ||||| || |||||||| | Sbjct 449 AATCCAAAAAATAGACGC-AAAGCTACCAGAAAAAAAAATACCTTCAACCGCCGCAAAAG 507 Query 48283 CGGTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAG 48339 | ||| | ||||| |||| || ||| |||||||| || ||| || | Sbjct 508 CCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACTCCATTCCG 567 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGC 48399 |||| || || | ||||| |||||||| |||||||| | ||| ||||||| || | Sbjct 568 CCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTTTTGCTTTC 627 Query 48400 TATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTG 48459 |||||||| ||| | || ||||| ||||||||| || || || || ||||| || Sbjct 628 GATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTTTTCCATCA 687 Query 48460 CCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTT 48519 || ||||||||| |||||| | | || || | || || || | |||| |||| Sbjct 688 TCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTATTGGACTTCTTTGGAAAACCGTT 747 Query 48520 CAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAA 48579 || | | ||| ||||| ||||| |||||||| || |||||||| || || || || | Sbjct 748 CAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGATA 807 Query 48580 TAAAATATTTTTCGT-----TGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATAT 48634 |||| | | ||| | | || ||| || ||||| | ||| ||| | || | Sbjct 808 TAAATTTTCGTTCTTTATCATTTAAATCA--TTTTTCCAATGCACGATGTCTGTAGAAAA 865 Query 48635 ATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATC 48694 ||| | |||||| | |||||||| || |||| |||||||||| |||||||| || Sbjct 866 ATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGTTCCATATGTC 925 Query 48695 ACTGTATTGGATTGGGAAAATAACAAATCTATTT 48728 | | ||| || || || ||||| | ||| || Sbjct 926 ATGATGTTGTATAGGATAAGTAACATACCTACTT 959 >seq83784 Length=3932 Score = 138 bits (152), Expect = 2e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| || |||||||| || ||||||||||| ||||| || || | |||||| ||||| Sbjct 3846 CCAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAA 3787 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| ||| || | |||| | ||||| | ||| |||||| |||| ||| |||| Sbjct 3786 AATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTT 3727 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 ||||||||||||| || || || |||||||| || ||||| ||||| || ||| || | Sbjct 3726 CTTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACT 3667 Query 48703 GGATTGGGAAAATAACAAATC 48723 || ||||| | |||||||| Sbjct 3666 CAATGGGGAAGACAACAAATC 3646 >seq179164 Length=2243 Score = 111 bits (122), Expect = 2e-19 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || ||||| || ||| || || ||||||||||| | ||| | | || ||||| ||| Sbjct 1934 CCTTTACTGACAGGTGAGCCTTTGTATGTTTCATATGCTCCCAATTTCTCTGCTAGATCA 1875 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 ||||| || ||||||||| | || || || || || || || | | || || | || Sbjct 1874 CAACTGGCATCCAATGCTGCATAGTAGATAGTGTCAAAGATTTCCCGGTTCAGTTTCTGG 1815 Query 77460 GCTTCAATACTATCAAACGGATAATGTAA--AAGAATAAAGGCATCTGCTAATCCCTGAA 77517 || || ||| ||||| || ||| | | |||| | || |||||||||| |||||| | Sbjct 1814 GCCTCTTCACTCTCAAATGGG-AATCTCATCAAGA-TGAATGCATCTGCTAGTCCCTGGA 1757 Query 77518 CTCCAATACCAATAGGTCTATGTC 77541 ||||||||||||||||||| |||| Sbjct 1756 CTCCAATACCAATAGGTCTGTGTC 1733 >seq120769 Length=3061 Score = 100 bits (110), Expect = 4e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| || ||||| ||||||||||| || || | |||||| ||||| || ||||| ||| Sbjct 1682 GACATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCT 1623 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAt 47944 || | ||| || | ||||||||| ||||||||||| || |||| || || Sbjct 1622 TCTAGTGAGATCTGTTCCATAAAGTCAAATGGATTTTCTACATTGTATAT 1573 >seq303667 Length=1354 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 171018 AGGCATTTAAAAAATTTCCATCTGGAATGTTTGCAGAAGTAAAATATGATGGTGAACGAG 171077 |||| |||||||||| ||| |||||||| |||||| | |||||||| || ||| ||| Sbjct 326 AGGCTTTTAAAAAATGTCCCAATGGAATGTATGCAGAGATGAAATATGACGGAGAAAGAG 267 Query 171078 TCCAAGTTCATAAAAACAATAATAATTTTGCCTTCTTTAGCAGAAACATGAAACCAGTT 171136 | |||||||||||||| |||| ||| ||| ||| || ||||| ||||||| ||| Sbjct 266 TTCAAGTTCATAAAAAGGGAGATAACTTTTCCTACTTCAGTAGAAATTTGAAACCTGTT 208 >seq705227 Length=470 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||||||||| ||||| | ||| | ||||| Sbjct 314 TCATCTCTGCTGATGAGTTCATTGCTGAATGTGAGACCAGGCATAATTCCTCTCTTTTTC 255 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| |||||||| || ||| ||||| || ||||| ||||| || || ||||| || Sbjct 254 AACCAGAATATTGCTGCAAAACTGCCAGAGAAAAATATCCCTTCAACAGCTGCAAAGGCA 195 Query 48285 GTAAGTCTCTCTCCGTA-ACTGGCTTCGTT--GTGTATCCACCGTTGTGCCCAATCAGCC 48341 || ||| ||| | || || || ||| | |||||| ||||| || ||| Sbjct 194 ACAACTCTTTCTGCATATGATGCATTTGTTTCATTTATCCATTTAATGGCCCAGTCTGCC 135 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 ||||| || ||||| || | || || |||||||| || ||| Sbjct 134 TTCTTTTTCACACATGGTAAAGTCTCAATAGCATTGAATAGA 93 >seq162926 Length=2426 Score = 93.3 bits (102), Expect = 6e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||||| | ||||||||| |||||||| ||| ||| ||| ||||||| || Sbjct 1486 GTATATAACTTTTCAAATTCTTCTCCCCAGCAGTCAGCCAGTCCCTTACATTCATGAGGA 1545 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||||| | ||| ||||||| | || || |||||||| | ||| |||||||| Sbjct 1546 CACATCAGGGTCCAATCACCATTAGATTCTACCCGCTTCATAAACAAATCTGGTATCCAC 1605 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTA-AGATC 78091 | ||| ||| | |||| | || ||||| |||||||| ||||| || || | Sbjct 1606 ATGGCATAAAACAAGTCTCTTGCCCTGGACTCTTCCTTTCCTGTGTTCTTCTTGCAGTCC 1665 Query 78092 GAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 ||||| || | ||||| | |||||||||||| Sbjct 1666 AAGAAA-TCAAAGATATCTGCATGCCATGGTTC 1697 >seq253853 Length=1630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || ||||| || ||| || || ||||||||||| | || | | || ||||| ||| Sbjct 190 CCTTTACTGACAGGTGAGCCTTTGTATGTTTCATATGCCCCCAATTTCTCTGCTAGATCA 131 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGT 77459 ||||| || ||||||||| | ||||| || || || || || | | || || | || Sbjct 130 CAACTGGCATCCAATGCTGCATAATAGATAGTGTCAAAGATTTGCCGGTTCAGTTTCTGG 71 Query 77460 GCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACT 77519 || || ||| ||||| || | | || || || |||||||||| |||||| ||| Sbjct 70 GCCTCTTCACTCTCAAATGGGAACCTCATCAGGATGAAAGCATCTGCTAGTCCCTGGACT 11 Query 77520 CCAATACCAA 77529 |||||||||| Sbjct 10 CCAATACCAA 1 >seq123025 Length=3020 Score = 84.2 bits (92), Expect = 3e-11 Identities = 183/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 171720 GTTCTGGACATGATGATAATACTTTAAGGGCTTTACAGGACCAA-TTAAAGATGATTAAA 171778 |||| || | ||||||||| |||||| | ||||| ||| || ||| || | || Sbjct 2263 GTTCAGGTCTTGATGATAAGACTTTAGAAGAACTACAGTTCCAGCTTGAAGTTG-TGAAG 2321 Query 171779 ATTAATAAGAACCCCCAAAAAATTCCAGAGTGGTTAGTAGTTAATAAAATATATATTCCC 171838 || || || || | ||| | ||| | |||||| |||||||| | | |||| Sbjct 2322 ATCAACAAAGACGTCACCAAAGTACCAAACTGGTTACATGTTAATAAG-TCCCTGGTCCC 2380 Query 171839 -GATTTTGTAGTAGAGGATCCTAAACAATCTCCTATATGGGAGATTTCAGGAGCTGAGTT 171897 |||||||| || |||| || ||| |||| || || ||||| ||| ||||| ||||| Sbjct 2381 TGATTTTGTTGTCAAGGACCCAAAAGAATCGCCAATTTGGGAAATTATTGGAGCAGAGTT 2440 Query 171898 CACATCATC-CAAGTCGCATACAGCAAATGGAATATCTATTAGATTTCCTAGATTCACTA 171956 | ||| | || | |||||||| |||| ||||| || ||||| || || | || Sbjct 2441 TAGTAAATCACCAGCC-CATACAGCTGATGGGATATCAATCAGATTCCCCAGGATTGCTG 2499 Query 171957 GGATTAGAGACGATAAAACATGGAAA 171982 ||||||| |||||||||||| || Sbjct 2500 ATGTTAGAGATGATAAAACATGGGAA 2525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685965173037760