Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq380849 309 4e-79 seq83784 149 9e-31 seq218873 109 8e-19 seq162926 109 8e-19 seq303667 107 3e-18 seq179164 89.7 7e-13 seq660234 86.0 9e-12 >seq380849 Length=1041 Score = 309 bits (342), Expect = 4e-79 Identities = 606/884 (69%), Gaps = 29/884 (3%) Strand=Plus/Plus Query 46353 TACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAAATCAAA 46412 ||| | ||| || |||||||| | | |||| || | || || |||||||| || ||| Sbjct 86 TACTCTTTTTTCAAAAAAATTTGATCTGCCGTCTAGAGAAATGTTTTCCATGAACGAAAA 145 Query 46413 CGGATTAGTAACATTA---TAAAtttttttAAATCCTAATTCTGAAATCAGTCTATCTGC 46469 ||||| | ||||| ||| || || ||| |||| | | ||||||||| | Sbjct 146 GGGATTTTTTGCATTAAAATAAGCTTCGTT---TCCCAATTGACACAACAGTCTATCACC 202 Query 46470 AACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAG 46529 |||| |||||||||||||| ||| ||| ||||||| || || | | | || | Sbjct 203 AACGTATTCTATATACGTTGACATTTTTTTTGAATTCATCCCAATCAAATCGCATGGCAA 262 Query 46530 AGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCG--ATATTATCGATGTTACT 46587 ||| | | | ||| || | |||||| | | ||||| ||| |||| | || Sbjct 263 AGCATTAATTAAAAAGTCCTTTTCAATTGCTATGGCATCAAGAATAATATC--TCGAACG 320 Query 46588 GTTTCCTCACTTGGTGGATGCATCAAATGTT---TAAACATTAAACATGCAAAATCACAA 46644 ||||| | | ||| | || ||||| | |||| | || |||||||| || ||| Sbjct 321 GTTTCTTTAGAAGGTTTGTTAATTAAATGGTCGTTAAATAACAAGCATGCAAAGTCGCAA 380 Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCA 46704 || | ||||| |||||||||||||||||||| || | | | || | || ||| Sbjct 381 TGCATCCCTTCGTCTCTACTAATTAATTCGTTGCTGGCAGTTAACGCTGGTAATAATCCT 440 Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAATATGCCTTCTACAGC 46763 | ||||| | |||||| |||| ||| |||| | |||||||| || || ||||| || || Sbjct 441 CTATTTTTAATCCAAAAAATAGACGC-AAAGCTACCAGAAAAAAAAATACCTTCAACCGC 499 Query 46764 CGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA---TCATTATGAATCCACCTTTGAGC 46820 ||| || || ||||| | ||||| |||| ||| || || ||||| ||| | Sbjct 500 CGCAAAAGCCACAAGACGTTCTCCAAAACTCGCAGTCTCGGACTGTATCCATTTTTTACT 559 Query 46821 CCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttttt 46880 ||| || |||||||| || | ||||| |||||||| |||||||| | ||| ||||| Sbjct 560 CCATTCCGCCTTTTTTTTAATTGTGGGCATAGTTTCTATTGCATTAAATAAAAATTTTTT 619 Query 46881 ttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTT 46940 || | | |||||||| || | || ||||| ||||||||| || ||||| ||||| Sbjct 620 TTGCTTTCGATCTTTAATGTACGACTCAATTAACTGACTATACAACTCCGAATGTATGTT 679 Query 46941 TTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC--AGTAATCTGTACCTCTGTA 46998 ||| || || ||||||||| |||||| | |||| || |||| || || ||| | Sbjct 680 TTCCATCATCACCTGAAATCCATAAAAAACTTTTGCCTCCAAGTA--TTGGACTTCTTTG 737 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 |||| |||||| | ||| ||||| ||||| |||||||| || |||||||| ||||| Sbjct 738 GAAAACCGTTCAACTATATTTTCATTAACTATGCCATCACTGGCTGCAAAAAAAGCCAAA 797 Query 47059 ACATGTTTAATAAAAT---ATTTTTCATCGGT--AGTCAGTTTATTCCAGTCATTGATAT 47113 || || ||||| | || || ||| | | ||| || ||||| | ||| | Sbjct 798 ACGTGAGATATAAATTTTCGTTCTTTATCATTTAAATCA--TTTTTCCAATGCACGATGT 855 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 || | || | ||| | |||||| | ||||| || || |||| |||||||||| | Sbjct 856 CTGTAGAAAAATCCAGCTCTTCAACCGTCCAAAAACTAGCTTCTGTCCTTTTATACATGT 915 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTT 47217 ||||||| ||| ||| ||| || ||| || ||||| | ||| || Sbjct 916 TCCATATGTCATGATGTTGTATAGGATAAGTAACATACCTACTT 959 >seq83784 Length=3932 Score = 149 bits (164), Expect = 9e-31 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| || ||||| || || ||||||||||| ||||| || |||| |||||| |||||| Sbjct 3845 CAAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAA 3786 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 || ||| || || |||| | ||||| | ||| |||||| |||| ||| ||||| Sbjct 3785 ATGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTC 3726 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||||||||||||||| || || |||||||| || ||||| ||||| || ||| |||| | Sbjct 3725 TTCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGATACTC 3666 Query 47193 GATCGGAAAAATAACAAATC 47212 || || || | |||||||| Sbjct 3665 AATGGGGAAGACAACAAATC 3646 >seq218873 Length=1880 Score = 109 bits (120), Expect = 8e-19 Identities = 396/615 (64%), Gaps = 20/615 (3%) Strand=Plus/Plus Query 76237 AAAATCAAATTTTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 ||||| |||| ||||||| | ||||| | ||||||| || ||| | | || Sbjct 381 AAAATTAAATGTTCCATCAGACGTTACAAATTTGGGTAGAGCTAATGAACCTAAAGTGCA 440 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 || || ||| | | |||| | | ||||| || || | || ||||| || | ||| Sbjct 441 CACACCTGTCTCTTCATCATTACTAAAATGTATGATTTCTGCACACAGATTGCTGCTCTT 500 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAA 76413 ||||| || | || || |||||| |||| ||||||| || || || | | Sbjct 501 TATAGTCCCTAAATGTTTATGGTTGGATTTTTCGTTACATTCATCTTTGAGTAGCATGTA 560 Query 76414 CGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT 76473 || ||||| |||||||| |||| |||||| || ||| | ||| || |||| Sbjct 561 AGGGGTTCCGGTTTCAATTTGTGCCATAATAATACTTTGCCATATATCTCGGGCCTTTAC 620 Query 76474 TA-TAGATTTGTATCGCTTC------TCTCTTTCATATTGTGTATATAACCGTTCAAATT 76526 | | |||| |||| ||| || | || || || |||||| |||||| | Sbjct 621 AACTTGATT-GTATTTCTTACTGGGATCATTCTCGTAAGACGTGTATAACTTTTCAAACT 679 Query 76527 CATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCAC 76586 || | || | ||| ||||| |||||| | |||||||| || | ||| || Sbjct 680 CAGCACCGTAGCAATCGGATAAACCTTCACATTCGCTAGGACACATTAAAGTCCAGTCTG 739 Query 76587 CATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTC 76646 || | | ||| | || | ||| |||| || | ||||| || | || | ||||| Sbjct 740 CACCAGCTCGAACTCTTTCAAAAAACAGATTCGGAAGCCATAACGCTGTGAACAAATCTC 799 Query 76647 GGGTTCTACGTTCTTCATTT---CCTGTATTCTTTTTAAGATCTAGGAACTCCATAATAT 76703 ||| || |||||||| | || ||||| ||||||||||||| |||| | || || | Sbjct 800 TGGTCCT---TTCTTCATCTACCCCCGTATTTTTTTTAAGATCTAAGAACGCAATTATGT 856 Query 76704 CAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGAT 76763 | | |||||||||||| ||| | | ||| | ||| || ||||| ||||||||| Sbjct 857 CGGCATGCCATGGTTCCAGAAAAAAAACCAAAGGTCCCTTTCTTTTAT---CTCCCTGAT 913 Query 76764 CTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTAC 76823 | ||| | ||| |||| ||||||| ||| ||| | || || |||| ||| Sbjct 914 TGACGAGTCTTGTCGTGGAATTAAAAACTCTTAACCGTGGCACTATACCACGAGATATAC 973 Query 76824 CATTTGTTCCAGAAA 76838 | | ||| | |||| Sbjct 974 CGTCTGTATCGGAAA 988 >seq162926 Length=2426 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 76507 TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGG 76566 |||||||||| ||||||||| |||||||| ||| ||| || |||||||| || Sbjct 1485 TGTATATAACTTTTCAAATTCTTCTCCCCAGCAGTCAGCCAGTCCCTTACATTCATGAGG 1544 Query 76567 ACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCA 76626 |||||||| | ||| ||||||| | ||||| |||||||| | ||| |||||||| Sbjct 1545 ACACATCAGGGTCCAATCACCATTAGATTCTACCCGCTTCATAAACAAATCTGGTATCCA 1604 Query 76627 TAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATC 76686 | ||| ||| | |||| | || ||||| |||||||| ||||| || || Sbjct 1605 CATGGCATAAAACAAGTCTCTTGCCCTGGACTCTTCCTTTCCTGTGTTCTTCTTGCAGTC 1664 Query 76687 TAGGAACTCCATAATATCAGAATGCCATGGTTC 76719 | ||| || | ||||| | |||||||||||| Sbjct 1665 CAAGAAATCAAAGATATCTGCATGCCATGGTTC 1697 >seq303667 Length=1354 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 169586 AGGCATTTAAAAAATTTCCATCTGGGATGTTTGCAGAAGTCAAATATGACGGTGAACGAG 169645 |||| |||||||||| ||| ||| |||| |||||| | ||||||||||| ||| ||| Sbjct 326 AGGCTTTTAAAAAATGTCCCAATGGAATGTATGCAGAGATGAAATATGACGGAGAAAGAG 267 Query 169646 TGCAAGTTCATAAAAATAATAACAACTTTGCCTTCTTTAGTAGAAATATGAAACCAGTT 169704 | |||||||||||||| | |||||| ||| ||| ||||||||| ||||||| ||| Sbjct 266 TTCAAGTTCATAAAAAGGGAGATAACTTTTCCTACTTCAGTAGAAATTTGAAACCTGTT 208 >seq179164 Length=2243 Score = 89.7 bits (98), Expect = 7e-13 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 ||| || || |||||||| || | || || || ||||| || ||||| || || || Sbjct 1920 TGAGCCTTTGTATGTTTCATATGCTCCCAATTTCTCTGCTAGATCACAACTGGCATCCAA 1861 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATC 76068 || | || || || || || || || | | || || | || || || ||| || Sbjct 1860 TGCTGCATAGTAGATAGTGTCAAAGATTTCCCGGTTCAGTTTCTGGGCCTCTTCACTCTC 1801 Query 76069 AAAAGGATAATGTAA--AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 ||| || ||| | | |||| | |||||||||||||||||||| ||||||||||||||| Sbjct 1800 AAATGGG-AATCTCATCAAGA-TGAATGCATCTGCTAGTCCCTGGACTCCAATACCAATA 1743 Query 76127 GGTCTATGTC 76136 ||||| |||| Sbjct 1742 GGTCTGTGTC 1733 >seq660234 Length=515 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 ||| |||| |||||||| ||||| | || |||||||| ||||||||||| || || || Sbjct 265 ATCCTTAATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGC 206 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 ||||| ||||| || ||||| ||||| || ||| || || || ||| |||| ||| Sbjct 205 TATCTGGAATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACTGAATCTTTC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704001920138880