Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mytilus_20galloprovincialis_20[genbank_20GCA_5F001676915.1_202017- 03-16] 1,002,334 sequences; 1,500,149,602 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq380849 248 9e-61 seq83784 91.5 2e-13 seq120769 87.8 2e-12 seq660234 86.0 6e-12 >seq380849 Length=1041 Score = 248 bits (274), Expect = 9e-61 Identities = 413/593 (70%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 23497 TTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTA 23556 ||||| || || |||||||| || ||||| | ||||| || |||||||| ||||| || Sbjct 354 TTAAATAACAAGCATGCAAAGTCGCAATGCATCCCTTCGTCTCTACTAATTAATTCGTTG 413 Query 23557 GAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT 23616 ||||| |||| | |||||||| |||||||||||||| || | ||||| Sbjct 414 CTGGCAGTTAACGCTGGTAATAATCCTCTATTTTTAATCCAAAAAATAGACGCAAAGCTA 473 Query 23617 CCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCA 23676 || ||||| |||||||| ||||| |||||||| |||||||||||| ||||| | ||| Sbjct 474 CCAGAAAAAAAAATACCTTCAACCGCCGCAAAAGCCACAAGACGTTCTCCAAAACTCGCA 533 Query 23677 TTATAATCAGA---AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATT 23733 | || || ||||||||||| |||| | ||||| ||| | || Sbjct 534 GT---CTCGGACTGTATCCATTTTTTACTCCATTCCGCCTTTTTTTTAATTGTGGGCATA 590 Query 23734 GTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT--ATCTGTTATATATGTATCAA 23791 ||||| ||||| || | | |||| |||||| | | || |||| | || || | |||| Sbjct 591 GTTTCTATTGCATT--AAATAAAAATTTTTTTTGCTTTCGATCTTTAATGTACGACTCAA 648 Query 23792 TTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAAC 23851 ||| |||||||| || ||||| || ||||| || | |||||| ||||||||| Sbjct 649 TTAACTGACTATACAACTCCGAATGTATGTTTTCCATCATCACCTGAAATCCATAAAAAA 708 Query 23852 ATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAA 23911 | | || || | |||| || || || |||| | || | ||| |||||| ||||| | Sbjct 709 CTTTTGCCTCCAAGTATTGGACTTCTTTGGAAAACCGTTCAACTATATTTTCATTAACTA 768 Query 23912 TACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCAG 23968 | |||||||| || ||||| ||||| | ||| | |||||| | || ||| |||| Sbjct 769 TGCCATCACTGGCTGCAAAAAAAGCCAAAACGTGAGATATAAATTTTCGTTCTTTATCAT 828 Query 23969 TTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAA 24028 || | |||||||||| || ||| | || ||||| | || ||||| ||||||| Sbjct 829 TTAAATCATTTTTCCAATGCACGATGTCTGTAGAAAAATCCAGCTCTTCAACCGTCCAAA 888 Query 24029 AACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGA 24081 |||| || | | |||||||| ||| || |||| ||||||||| ||| Sbjct 889 AACTAGCTTCTGTCCTTTTATACATGTTCCATATGTCATGATGTTGTATAGGA 941 >seq83784 Length=3932 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 23896 AAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAA 23955 || ||||| || ||||| ||||||||||| ||||||||||| || |||| | |||||| Sbjct 3844 AAGTTTTCATTTACAATGCCATCACTAGCTGCAAAGAAAGCCAGGACATGTGAAATAAAA 3785 Query 23956 TGTCTTTCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCA 24015 ||| | || ||| | | | ||| | | | | |||||| |||||||||||||| Sbjct 3784 TGTTTCTCCTCATCTTTCAGAGCGTCCCAGTGAATGAGATCTTTAGATAAATCAACTTCT 3725 Query 24016 TCAACTGTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTAT 24070 ||| ||||||| || || || ||| |||||| |||||| |||| || Sbjct 3724 TCAGCTGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATTTTCCAAATGTCATGAT 3670 >seq120769 Length=3061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| |||||||| ||||||||||| || || | | | || ||||| ||||| || || || Sbjct 1680 CATGACACCCATCTTTTGATATTCTCCTACTCTTTTCTCAAAAAAGTTTGTTTTTCCTTC 1621 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATT 23297 || ||| || | ||||||||| ||||||||||| Sbjct 1620 TAGTGAGATCTGTTCCATAAAGTCAAATGGATT 1588 >seq660234 Length=515 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 23779 ATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGA 23838 || ||||||||||||| || || ||||||||||||||||| || || || || ||||| Sbjct 258 ATGTATGTATCAATTAACAAGCTGTACATTTCAGAATGAATGTTCTCCATTGCTATCTGG 199 Query 23839 AACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTT 23890 || ||||| ||||| || || || | |||||| || ||| ||||||| Sbjct 198 AATCCATAGAAACACCTTGCCTCTGTAGCTTGAACTTCCTTACTGAATCTTT 147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514954185587600