Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq8589 134 1e-26 seq10764 89.7 5e-13 >seq8589 Length=14632 Score = 134 bits (148), Expect = 1e-26 Identities = 374/566 (66%), Gaps = 21/566 (4%) Strand=Plus/Plus Query 16966 TGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCC 17025 ||| ||||| ||||| | ||| || || | || | |||||||||||||| || || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 17026 GGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATAT 17085 ||||| |||| ||||||||||||||| || | |||| || || |||||||| Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 17086 ACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGAA 17144 || || || | |||||| ||||| | || ||| || | | | | || || Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTC-------AA 5969 Query 17145 TCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA 17204 ||||||| |||| || |||||| ||||| | | ||| || || | | Sbjct 5970 TCCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGA 6029 Query 17205 ATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTT 17264 ||||||| ||||| || || | | ||| ||||| || | || || ||| Sbjct 6030 ATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTT 6089 Query 17265 CGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTT 17324 || || || |||||||| || |||||||| || || || ||||| || || Sbjct 6090 CGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATT 6149 Query 17325 GAACTTCC---ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 | ||||| || | ||| ||| |||| |||||| ||||| || ||||| || | Sbjct 6150 GCACTTCATTAAC--AAAATT-TTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAG 6206 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC-CGGTGTAAGAACGCG--CC 17438 | ||||| || || ||||||||||| ||||||||||| || | ||| || | || Sbjct 6207 CAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCC 6266 Query 17439 AGTCCTTTAAATCTTTGGAT--ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 |||| | | ||||| ||| | ||| | |||||| | ||||||||||| ||| | Sbjct 6267 AGTCTGTGATATCTT--GATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCAT 6324 Query 17497 CTTTTTATACATATTCCAAATATCAT 17522 ||||| ||| | ||||||||||| Sbjct 6325 TTTTTTGTACCATTCCCAAATATCAT 6350 >seq10764 Length=1253435 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || ||||| || ||||| || ||||||| | | ||||||||||| |||||||| | Sbjct 935295 CCTACGTAACCATTGGGGTCGATTCCATCAAGTGCATATTTATCGTTAAAGTAGATCGCG 935354 Query 119921 ACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACATA 119980 | |||| || |||| || | ||| ||||||| || || || || |||||||||||| Sbjct 935355 TCACTTAGAGCTGTTTCGGGCGAGTCGGTCCATTCGAGAATCTTCTTTGCCCAGTACATA 935414 Query 119981 CGTAAGTATCCATGCATTTTACCTTCACGAAC 120012 |||| | || || | || |||||||| || Sbjct 935415 CGTAGAAAACCGTGAAGCTTGCCTTCACGTAC 935446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517475705466720