Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq8589 174 2e-38 >seq8589 Length=14632 Score = 174 bits (192), Expect = 2e-38 Identities = 381/564 (68%), Gaps = 19/564 (3%) Strand=Plus/Plus Query 16205 GCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCT 16264 || || || ||||| | |||||| || | || | ||||| ||||| ||||| || Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 16265 GGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATA 16324 |||||| |||| |||||||||||| || || | | ||| | || || |||||||| Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 16325 CCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATC 16384 || || |||| |||||| ||||| | || ||| || | | | || | | ||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA------ATC 5971 Query 16385 CATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAAC 16444 ||||| | ||||||| |||||| |||||| | | ||| || || | || Sbjct 5972 CATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAAT 6031 Query 16445 AATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504 ||||| ||||| || ||| | | ||| |||||||||| | | || |||| Sbjct 6032 AATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCG 6091 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 || || ||||| || || |||||||||||||| || ||| || || ||| Sbjct 6092 CTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGC 6151 Query 16565 ACTTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCA 16621 ||||| || ||||| ||| || | || |||||||| || |||||| ||||||| Sbjct 6152 ACTTCATTAAC--AAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCA 6208 Query 16622 AAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC-AGATGTAA--GAATATGCCAA 16678 ||||| || || || |||||||| ||||||||||| || || ||| | | ||| Sbjct 6209 AAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAG 6268 Query 16679 TCTTTTAAATCTTTGGAT--ATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCT 16736 ||| | | ||||| ||| | ||| | |||||| | |||||||| || ||| | | Sbjct 6269 TCTGTGATATCTT--GATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTT 6326 Query 16737 TTTTATACATTTTCCAAATATCAT 16760 |||| ||| || ||||||||||| Sbjct 6327 TTTTGTACCATTCCCAAATATCAT 6350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511345333485280