Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8589 255 7e-63 seq10803 125 8e-24 seq10743 120 4e-22 >seq8589 Length=14632 Score = 255 bits (282), Expect = 7e-63 Identities = 411/584 (70%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 24137 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 24196 ||| ||||| || || | || || || | | |||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 24197 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 24256 ||||||| || | || || | |||||| || || ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 24257 TCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCA 24316 |||||| || || ||||| || ||||||||||| || || | ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 24317 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 24376 ||| ||||| || || || |||||| || | || ||||||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 24377 ATAGtttttttCATTACT-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 | | ||| || | || |||||| ||||| ||||||||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||||| || || || ||||||||||| |||||| || |||| |||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 24496 CTTC-TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 |||| | ||||||| ||||||||||||||||||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCA 24611 || || || | ||| || |||||||||||||| ||| ||| || | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 ||||||||| | | ||| | |||||| | |||||||| |||||| ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 ||| | ||| || ||||||| | |||||||||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10803 Length=2816097 Score = 125 bits (138), Expect = 8e-24 Identities = 218/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366 ||| || || || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 || ||||||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || || ||||| | ||| || || || || || ||||| |||||||| | || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 54487 CGTCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 54545 ||||| ||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 54546 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAG 54605 ||||||| ||||| || | | |||| || || || || | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 54606 T-TTTAAAACCAA 54617 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 >seq10743 Length=1036592 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24212 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 24271 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 24272 AAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCA 24328 |||||| |||| || || ||| | || || | || ||||| || ||||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 108017 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 24212 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 24271 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 24272 AAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCA 24328 |||||| |||| || || ||| | || || | | ||||| || ||||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 63202 CGCCTTGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 24212 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 24271 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 24272 AAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCA 24328 |||||| |||| || || ||| | || || | | ||||| || ||||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 76783 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 76782 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 76723 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 76722 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 76666 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 24212 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 24271 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 24272 AAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCA 24328 |||||| |||| || || ||| | || || | | ||||| || ||||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 90030 Query 24329 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 24388 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 90029 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 89970 Query 24389 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 89969 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 89913 Score = 113 bits (124), Expect = 5e-20 Identities = 167/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 24213 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 24272 || || ||||| || |||| ||||| || ||||||||||| || || ||||| || ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 24273 AAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAA 24329 ||||| |||| || || ||| | || || | | ||||| || ||||||| Sbjct 81824 AAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAG 81765 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 81764 TGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTCT 81705 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 81704 GCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 24567 TG 24568 || Sbjct 63608 TG 63609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 24567 TG 24568 || Sbjct 76405 TG 76404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || || |||||||| ||||| ||||| | ||||||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 24567 TG 24568 || Sbjct 81298 TG 81297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 24567 TG 24568 || Sbjct 89653 TG 89652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 24447 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAA 24506 ||||| || || || || |||||||| || || ||||| | ||||||||||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 24507 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 24566 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 24567 TG 24568 || Sbjct 108422 TG 108423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 23966 TCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 24025 ||||||||| |||||||| ||||| | |||||| |||| ||||| || || || || Sbjct 90881 TCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGCTT 90822 Query 24026 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 24085 ||||||||||| || || || || || ||||| || || || | || || Sbjct 90821 GACTGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATTCC 90762 Query 24086 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 24145 ||| || || || ||| || || | || | || ||||||| || || || || Sbjct 90761 TCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAGTC 90702 Query 24146 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 24205 ||| || ||||| || ||||| || || | || || || || || || || ||||| || Sbjct 90701 GCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATAAG 90642 Query 24206 GCC 24208 || Sbjct 90641 TCC 90639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641417897920