Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq10485 127 3e-24 seq10777 109 8e-19 >seq10485 Length=261005 Score = 127 bits (140), Expect = 3e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| || ||| |||| ||||| ||| Sbjct 97661 AATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAG 97720 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||||||||||| || ||||| || || || || || Sbjct 97721 CGACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 97780 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATA 124716 |||| | || || || || |||||||| |||| ||| | |||| | |||| || || | Sbjct 97781 ACAACGACTCATCTTCGCCGGAAAACAGCTAGAAGATGGCCGAACCCTTAG-CGACTACA 97839 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || || ||||| || ||| | || |||||| ||||| | |||| || || Sbjct 97840 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGGAAT 97891 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| || ||| |||| ||||| ||| Sbjct 97889 AATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAG 97948 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | ||| ||||||||||| || ||||| || || || || || Sbjct 97949 CGACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 98008 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAA-CATTAGAAGATTATA 124716 ||| | | || || || ||||||||| | || ||| | |||| | |||| || || | Sbjct 98009 ACAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAG-CGACTACA 98067 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 | || || ||||| || ||| | || |||||| ||||| | |||| || Sbjct 98068 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGG 98116 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || ||||| || ||||| ||||| || |||| |||| | | Sbjct 97433 AATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAG 97492 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| ||||||||||| || ||||| || || || || || Sbjct 97493 CGATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 97552 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || |||||| | || ||| | ||||| | || || || Sbjct 97553 ACAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 97612 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | || ||||| ||||| | |||| || || Sbjct 97613 CATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCAGAGGAGGAAT 97663 >seq10777 Length=1546546 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | || ||||| || || |||||||| || |||| | || | | | Sbjct 767466 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAACTATCACCCTAGAAGTCGAGCCTAGT 767525 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| |||||||||||| || ||||| || || || || ||| Sbjct 767526 GACACGATCGAGAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 767585 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || |||||||| | || ||| | ||||| || || || || Sbjct 767586 CAGCGTTTAATTTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTAAGCGACTACAAC 767645 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | || ||||| ||||| | ||||| || || Sbjct 767646 ATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCCGAGGAGGAAT 767695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755353975667200