Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10485 123 2e-23 seq10777 122 8e-23 seq10493 105 6e-18 seq10798 93.3 4e-14 >seq10485 Length=261005 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| || |||||||| ||||| | || || ||| || Sbjct 97870 ACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTAAGGGTTCGGCCATCTTCT 97811 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| ||||||| || || || || || || ||||| ||||||||| | Sbjct 97810 AGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGA 97751 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| ||||| | || | || || || | || | ||||| Sbjct 97750 ATTTTAGCTTTCACATTCTCGATTGTGTCGCTTGGT-TCAACTTCTAGAGTGATGGTTTT 97692 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || ||||| || ||||| Sbjct 97691 CCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 >seq10777 Length=1546546 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||||| | || || ||| || Sbjct 767674 ACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTTAGGGTTCGGCCATCTTCA 767615 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||||||||| ||| | || | |||||| || || || || ||||| ||||||||| | Sbjct 767614 AGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGA 767555 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||| ||||| | |||||| || | ||| | ||||| Sbjct 767554 ATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACTTCTAGGGTGATAGTTTTA 767495 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| ||||| || |||||| Sbjct 767494 CCAGTGAGTGTTTTCACAAAGATTTGCATG 767465 >seq10493 Length=264610 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| || | ||| ||||| || || |||||||| || |||| ||||| || ||| Sbjct 49491 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTCG 49432 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| || | || || ||||| || ||||| || ||||| | Sbjct 49431 AGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTGA 49372 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC---TCGACCTCGACGGTCACCGTT 118706 ||||| || || | ||||| || || |||| |||||||| | || | ||| Sbjct 49371 ATTTTCGCCTTCACATTTTCGATCGTATC---GCTCGGTTCGACCTCTAAAGTGATGGTT 49315 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || ||||||||||| || ||||| ||||||||| Sbjct 49314 TTTCCGGTCAGAGTCTTCACAAAGATCTGCATG 49282 >seq10798 Length=2343873 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||| ||||||||| | || ||||||||||| |||||||| ||||| Sbjct 1324526 ACCACCACGCAGCCTCAGCACCAAGTGTAGGGTTGACTCTTTTTGGATGTTGTAGTCGCT 1324467 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | || || ||| || ||||| || ||||| |||| ||||| ||||| || ||||| Sbjct 1324466 AAGGGTACGACCATCTTCAAGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGAGG 1324407 Query 118631 TATGCC 118636 ||||| Sbjct 1324406 AATGCC 1324401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433773275924368