Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq8589 188 7e-43 >seq8589 Length=14632 Score = 188 bits (208), Expect = 7e-43 Identities = 364/526 (69%), Gaps = 17/526 (3%) Strand=Plus/Plus Query 16238 GCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCT 16297 |||||||||||||||| |||||| || | | ||||||||||| |||||||| | ||| Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 16298 GGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATA 16357 ||||||| |||| ||| || | |||||| |||| ||| | || || |||||||| Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 16358 CCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatc 16417 ||||| || || |||||||| | | || ||| | | | | | || || ||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAG----AATCAGAC--TCAATC 5971 Query 16418 cattttttagcccaatttgctttt-tgtttAACACAGTTCATGTTCTCTATTGCATTAAA 16476 |||||| ||||| | ||||||| | |||| | | | | || || |||| || Sbjct 5972 CATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACT-TCAATAGCATGGAA 6030 Query 16477 TAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTC 16536 ||| | || ||| ||| |||| | ||||||||| || | | | ||| |||| Sbjct 6031 TAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTC 6090 Query 16537 TGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGG-ATATTT 16595 ||||||||||||||| || ||||| ||||| || || ||||||||| ||| || Sbjct 6091 GCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATA-TT 6149 Query 16596 GTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAA 16655 | |||||| ||| |||||||||| ||||| || || || || || || |||| Sbjct 6150 GCACTTCATTAACAAAATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAA 6209 Query 16656 AAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATC-TGAAAGTT--TTAACCAGT 16712 |||| || | || || |||||||||| |||||| | || | || || | ||||| Sbjct 6210 AAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGT 6269 Query 16713 CAGAAAAATCTTTTGAT--AAATCGACCTCTTCTACAGTCCAAAAA 16756 | | | ||| ||||| ||||| | ||||| ||||||||||| Sbjct 6270 CTGTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAA 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462449537754400