Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10803 132 4e-26 seq10493 118 9e-22 seq10485 116 3e-21 seq10777 109 5e-19 >seq10803 Length=2816097 Score = 132 bits (146), Expect = 4e-26 Identities = 232/335 (69%), Gaps = 7/335 (2%) Strand=Plus/Plus Query 22408 ATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAA 22467 ||||||||||| ||| || | ||||| ||||||| |||||| | || || | || || Sbjct 2060731 ATCGTTCCACAGACCCATCTCTGTCAAGTCTTTGAGAAGATGATGATTGACAATCTGGAA 2060790 Query 22468 CTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATT 22527 ||| || |||| ||||| | ||| || || ||| | || || | |||||| || Sbjct 2060791 CTCTCCTGACAGCACGCGTCTAGAGTAGATATTACTAGTGTATGGCTCAATAGATTCGTT 2060850 Query 22528 GTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCT 22587 || || ||||||||||| || || || || ||||| ||||| | |||||| ||| | Sbjct 2060851 ATTGCCAAGTATCTGAGCAGTGGACGCCGTGGGCATGGGCGCAATCAGTAGACTGTTGCG 2060910 Query 22588 CAAGCC--GTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645 | ||| || | |||| || | |||| ||| | |||||||||||| | || || Sbjct 2060911 GAGGCCATGTTCCTTGACCTTCT--TCTTCAGCGCCTCCCAGTCCCACAGGTTTGAGGGA 2060968 Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 || ||||| ||| | |||||| ||||| | || | || || || ||| ||||| Sbjct 2060969 GTGACATT---CCAGAGATCGTACTGCAATAACCCTTGGCTGGCGGGAGAGCCCTCGTAG 2061025 Query 22706 GTTTCGTACGGACCATATATCGCGGCAAGTTCGCA 22740 || || || ||||||| | || || || ||||| Sbjct 2061026 GTCTCATAAGGACCATTGGTAGCTGCCAGGTCGCA 2061060 >seq10493 Length=264610 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||||||||| || ||||| ||||| | || || |||||| Sbjct 49280 AACATGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGAGGTCGAACCG 49339 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||| | |||||| || || || ||| |||||| |||||| | ||||||||| Sbjct 49340 AGCGATACGATCGAAAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTCCGCCCGAC 49399 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || || ||||| ||||| || | |||||| || |||| || || Sbjct 49400 CAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACACTGAGTGACTAC 49459 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||||||||| || Sbjct 49460 AACATCCAGAAGGAGTCCACACTTCATCTGGTTCT 49494 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| | || |||||||| Sbjct 50423 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 50482 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||| || || | || || |||||| Sbjct 50483 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 50542 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| ||||| || | |||||| | || ||||||| || ||| Sbjct 50543 CAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 50602 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || ||||||||||| || | ||||| || || Sbjct 50603 ATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTGAGAGGAGG 50649 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| | || |||||||| Sbjct 49739 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 49798 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||| || || | || || |||||| Sbjct 49799 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 49858 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| ||||| || | |||||| | || ||||||| || ||| Sbjct 49859 CAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 49918 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || ||||||||||| || Sbjct 49919 ATCCAGAAGGAGTCCACACTTCATCTGGTTCT 49950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || ||||| | || |||||||| Sbjct 49967 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAGT 50026 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||| || || | || || |||||| Sbjct 50027 GACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 50086 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| ||||| || | |||||| | || ||||||| || ||| Sbjct 50087 CAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAAC 50146 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || || ||||||||||| || Sbjct 50147 ATCCAGAAGGAGTCCACACTTCATCTGGTTCT 50178 >seq10485 Length=261005 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || || || ||||| || |||||| | || ||||| || | Sbjct 97434 ATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAGC 97493 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| | ||| |||||||||||| | || || ||||| Sbjct 97494 GATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 97553 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| |||| |||||||| ||||| | ||||| || ||||||| || ||| Sbjct 97554 CAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAAC 97613 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| ||||| ||||| ||||| || Sbjct 97614 ATCCAGAAAGAGTCGACCCTTCACCTGGTTCT 97645 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| || ||||| ||||| | || |||||||| | Sbjct 97662 ATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAGC 97721 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| |||||||||||| | || || ||||| Sbjct 97722 GACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 97781 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || || ||||| || |||||| | ||||| || | ||||| || ||| Sbjct 97782 CAACGACTCATCTTCGCCGGAAAACAGCTAGAAGATGGCCGAACCCTTAGCGACTACAAC 97841 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| ||||||||||| |||| || Sbjct 97842 ATCCAGAAAGAGTCGACTCTTCACTTGGTTCT 97873 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| ||||| || ||||| ||||| | || |||||||| | Sbjct 97890 ATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAGC 97949 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| |||||||||||| | || || ||||| Sbjct 97950 GACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCAA 98009 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || ||||| || ||||| | ||||| || | ||||| || ||| Sbjct 98010 CAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACAAC 98069 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| ||||||||||| |||| || Sbjct 98070 ATCCAGAAAGAGTCGACTCTTCACTTGGTTCT 98101 >seq10777 Length=1546546 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || || || || ||||| |||||| | || || || || Sbjct 767465 CATGCAAATCTTTGTGAAAACACTCACTGGTAAAACTATCACCCTAGAAGTCGAGCCTAG 767524 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| || ||| |||||||||||| | || || ||||| Sbjct 767525 TGACACGATCGAGAATGTAAAAGCGAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 767584 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| |||| ||||| || |||||| | ||||| || | ||||| || || Sbjct 767585 ACAGCGTTTAATTTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTAAGCGACTACAA 767644 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||| ||||| ||||| ||||| || Sbjct 767645 CATCCAGAAAGAGTCGACCCTTCACCTGGTTCT 767677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445706199247680