Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8589 280 1e-70 >seq8589 Length=14632 Score = 280 bits (310), Expect = 1e-70 Identities = 416/583 (71%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 |||||||||||||| | ||||| || | | |||| || |||||||||||||| || Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| || |||| ||| |||| |||||| |||| | ||| | || || ||||||||| Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCAT 11812 || ||||||||||||||||| | | |||||| || | | | || || |||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAA-AGAATCAGACTCAAT--CCAT 5974 Query 11813 TTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAA 11872 ||| ||||| || ||||| |||||| | | ||| ||||| | ||||| Sbjct 5975 TTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAAT 6034 Query 11873 TGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAA 11932 | ||| |||| | |||| | ||||| ||||| || || | | ||| |||| | Sbjct 6035 TTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGCTA 6094 Query 11933 TGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACA 11992 |||||||| ||||| |||||||||||||||||| || || || | | | || || Sbjct 6095 TGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCACT 6154 Query 11993 TCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 || | ||| |||| |||||||| ||||| ||||| || ||| | |||||||| Sbjct 6155 TCATTAACAAAATTTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAAAAA 6214 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATT---TATCCCAATCATCT 12109 |||| ||||| || ||||| |||||||| |||| | |||||| | | ||| || | | Sbjct 6215 GCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTC-TGT 6273 Query 12110 AAATCTTTTGAT--AAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTAT 12167 || | ||||| ||||||| ||||||| | ||||||||||||||| | || ||| | Sbjct 6274 -GATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTGT 6332 Query 12168 ACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 || || ||| |||||||||| |||||| || ||||| || || Sbjct 6333 ACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468461525725760