Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8589 255 8e-63 seq10803 131 2e-25 seq10743 123 3e-23 >seq8589 Length=14632 Score = 255 bits (282), Expect = 8e-63 Identities = 431/615 (70%), Gaps = 12/615 (2%) Strand=Plus/Plus Query 36160 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 36219 ||| ||||| || || | || || || | | |||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 36220 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 36279 ||||||| || | || || | |||||| || || ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 36280 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 36339 |||||| || || ||||| || |||||||| || || || || ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||| ||||| || || || |||||| || | || ||||||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 36400 ATAGtttttttCATTACT-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 36458 | | ||| || | || |||||| ||||| ||||||||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 36459 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 36518 |||||| || || || ||||||||||| |||||| || |||| |||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 36519 CTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 |||| | ||||||| ||||||||||||||||||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTT---TATTCCAATCA 36634 || || || | ||| || |||||||||||||| | | ||| || | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 36635 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 36694 ||||||||| | | ||| | |||||| | |||||||| |||||| ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 36695 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTAT-TTTGATTTTT 36753 ||| | ||| || ||||||| | |||||||||||| ||||| | | ||| ||| | Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAAACGGTCCTTGTTTTCT 6391 Query 36754 TGCAAGGATTGGTTC 36768 || || |||||||| Sbjct 6392 TGTAA-AATTGGTTC 6405 >seq10803 Length=2816097 Score = 131 bits (144), Expect = 2e-25 Identities = 219/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 ||| ||||| || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 || ||||||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 || || ||||| | ||| || || || || || ||||| |||||||| | || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 66518 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 ||||||||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 66577 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 66636 ||||||| ||||| || | | |||| || || || | | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 66637 T-TTTAAAACCAA 66648 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 >seq10743 Length=1036592 Score = 123 bits (136), Expect = 3e-23 Identities = 170/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 36235 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 36351 |||||| |||| ||||| ||| | || || | || ||||| || ||||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 36352 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 36411 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 36412 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 108017 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 36235 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 36351 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 36352 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 36411 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 36412 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 63202 CGCCTTGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 36235 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCA 36351 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 76783 Query 36352 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 36411 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 76782 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 76723 Query 36412 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 76722 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 76666 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 36235 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 36294 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 36295 AAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCA 36351 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 90030 Query 36352 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 36411 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 90029 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 89970 Query 36412 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 89969 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 89913 Score = 118 bits (130), Expect = 1e-21 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 36236 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 36295 || || ||||| || |||| ||||| || ||||||||||| || || ||||| || ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 36296 AAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAA 36352 ||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 81824 AAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAG 81765 Query 36353 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 36412 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 81764 TGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTCT 81705 Query 36413 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 81704 GCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 36590 TG 36591 || Sbjct 63608 TG 63609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 36590 TG 36591 || Sbjct 76405 TG 76404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || || |||||||| ||||| ||||| | ||||||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 36590 TG 36591 || Sbjct 81298 TG 81297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 36590 TG 36591 || Sbjct 89653 TG 89652 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 36529 ||||| || || || || |||||||| || || ||||| | ||||||||||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 36530 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 36589 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 36590 TG 36591 || Sbjct 108422 TG 108423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658083913763360