Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq10485 111 2e-19 seq10493 93.3 4e-14 seq10798 87.8 2e-12 >seq10485 Length=261005 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||| | ||| | ||||| || |||||||| || ||||| || |||||| Sbjct 97660 CCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 97601 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| ||||||||||| | || | ||| || || || || || Sbjct 97600 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGA 97541 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| |||| | ||| | | ||| | || ||| | ||||| || Sbjct 97540 ATGCCTTCCTTGTC-TTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAAC 97482 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||| || | ||||| || || |||||||| Sbjct 97481 TTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 >seq10493 Length=264610 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | |||| || ||||| || || ||||| || || ||| Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| ||||||||| || || || || |||| || | ||| || ||||| || Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||||||||| ||| |||| | || | | ||| | || ||| | || || || Sbjct 49389 ATGCCTTCTTTGTC-CTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGAC 49331 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | || || ||||||| || || || || || ||||| Sbjct 49330 CTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCAT 49283 >seq10798 Length=2343873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||||||||| ||||| || ||||| | || | ||||| Sbjct 1324507 ACCAAGTGTAGGGTTGACTCTTTTTGGATGTTGTAGTCGCTAAGGGTACGACCATCTTCA 1324448 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCT 139663 ||||| ||||||||| |||| ||||||||||| || ||||| |||||| Sbjct 1324447 AGCTGCTTACCAGCAAAGATAAGACGTTGCTGGTCTGGAGGAATGCCT 1324400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495997006556800