Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8589 224 1e-53 seq10803 140 5e-28 seq10743 125 1e-23 >seq8589 Length=14632 Score = 224 bits (248), Expect = 1e-53 Identities = 404/584 (69%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 49962 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 50021 ||| ||||| || |||| || || || | | ||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 50022 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGAT 50081 ||||||| || | || || | |||||| || || ||| | || || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 50082 TCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCA 50141 |||||| || || ||||| || | |||||| || || || | ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 50142 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 ||| ||||| || || || |||||| || | | ||| || |||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 50202 ATAGtttttttCATTACT-ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 50260 | | ||| || | || |||||| ||||||||||| ||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 50261 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCA 50320 |||||| || || || || |||||||| |||||| || |||| |||| | |||| Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 50321 CTTC-TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 |||| | ||||||| ||| ||||||||||||||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTT---TATTCCAATCA 50436 || || || | ||| || ||||||| |||||| | ||| || | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 50437 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 50496 ||||||||| | | ||||| |||||| | |||||||| |||||| ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 50497 TACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 50540 ||| | ||| || ||||||| | ||||| ||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10803 Length=2816097 Score = 140 bits (154), Expect = 5e-28 Identities = 221/313 (71%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 80217 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 80276 ||| ||||| || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 80277 CTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 80336 || || ||||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 80337 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 80396 || || ||||| | ||| || || || || || ||||| |||||||||| || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 80397 CGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACA 80455 ||||||||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 80456 TGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAG 80515 ||||||| ||||| || | | |||| ||| || || | | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 80516 T-TTTAAAACCAA 80527 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 >seq10743 Length=1036592 Score = 125 bits (138), Expect = 1e-23 Identities = 174/241 (72%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 ||| || ||||| || |||| ||||| ||||||||||||||||| || ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-----ATGTATCCACTTTTGAGCC 50151 |||||| | || ||||| || || || ||| || || ||||| || ||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCC--AAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCC 107954 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || | |||||||| | ||||||||||| || || || ||||| || |||| | |||| Sbjct 107955 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 108014 Query 50212 tCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 || | ||||| || || | ||||||| ||| || ||||| || || || |||| Sbjct 108015 TCTGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGT 108072 Query 50270 T 50270 | Sbjct 108073 T 108073 Score = 120 bits (132), Expect = 4e-22 Identities = 173/241 (72%), Gaps = 11/241 (5%) Strand=Plus/Minus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 ||| || ||||| || |||| ||||| ||||||||||||||||| || ||||| || || Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-----ATGTATCCACTTTTGAGCC 50151 |||||| | || ||||| || || || ||| || | ||||| || ||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCC 76785 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || | |||||||| | ||||||||||| || || || ||||| || |||| | |||| Sbjct 76784 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 76725 Query 50212 tCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 || | ||||| || || | ||||||| ||| || ||||| || || || |||| Sbjct 76724 TCTGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGT 76667 Query 50270 T 50270 | Sbjct 76666 T 76666 Score = 120 bits (132), Expect = 4e-22 Identities = 173/241 (72%), Gaps = 11/241 (5%) Strand=Plus/Minus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 ||| || ||||| || |||| ||||| ||||||||||||||||| || ||||| || || Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-----ATGTATCCACTTTTGAGCC 50151 |||||| | || ||||| || || || ||| || | ||||| || ||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCC 90032 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || | |||||||| | ||||||||||| || || || ||||| || |||| | |||| Sbjct 90031 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 89972 Query 50212 tCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 || | ||||| || || | ||||||| ||| || ||||| || || || |||| Sbjct 89971 TCTGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGT 89914 Query 50270 T 50270 | Sbjct 89913 T 89913 Score = 118 bits (130), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 11/240 (5%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCA 50097 || || ||||| || |||| ||||| ||||||||||||||||| || ||||| || ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 50098 AAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-----ATGTATCCACTTTTGAGCCC 50152 ||||| | || ||||| || || || ||| || | ||||| || |||||| Sbjct 81824 AAGGCGATAATCCTCTCGCC--AAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCC 81767 Query 50153 AATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttttt 50212 | | |||||||| | ||||||||||| || || || ||||| || |||| | ||||| Sbjct 81766 AGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTT 81707 Query 50213 CATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 | | ||||| || || | ||||||| ||| || ||||| || || || ||||| Sbjct 81706 CTGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 116 bits (128), Expect = 5e-21 Identities = 172/241 (71%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 50037 CTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGC 50096 ||| || ||||| || |||| ||||| ||||||||||||||||| || ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 50097 AAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC-----ATGTATCCACTTTTGAGCC 50151 |||||| | || ||||| || || || ||| || | ||||| || ||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCC--AAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCC 63139 Query 50152 CAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttt 50211 || | |||||||| | ||||||||||| || || || ||||| || |||| | |||| Sbjct 63140 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 63199 Query 50212 tCATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGT 50269 || | ||||| || || | || |||| ||| || ||||| || || || |||| Sbjct 63200 TCCGCCTTGTCTTT--GATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGT 63257 Query 50270 T 50270 | Sbjct 63258 T 63258 Score = 100 bits (110), Expect = 4e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 49791 TCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 49850 |||||| || ||||| || ||||| | |||||| |||| ||||| || || || || Sbjct 90881 TCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGCTT 90822 Query 49851 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 49910 ||||||||||| | || || || || || |||||| || ||||| | || || Sbjct 90821 GACTGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATTCC 90762 Query 49911 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 49970 |||||| || || ||| || || | || | || ||||||| || || || || Sbjct 90761 TCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAGTC 90702 Query 49971 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 50030 ||| || ||||| || ||||| || || || || || || || || || || ||||| || Sbjct 90701 GCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATAAG 90642 Query 50031 GCC 50033 || Sbjct 90641 TCC 90639 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| || |||||||| || || ||||| | |||||| |||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 50392 TG 50393 || Sbjct 63608 TG 63609 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| || |||||||| || || ||||| | |||||| |||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 50392 TG 50393 || Sbjct 76405 TG 76404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| || |||||||| ||||| ||||| | |||||| |||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 50392 TG 50393 || Sbjct 81298 TG 81297 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| || |||||||| || || ||||| | |||||| |||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 50392 TG 50393 || Sbjct 89653 TG 89652 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 50272 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 50331 ||||| || ||||| || |||||||| || || ||||| | |||||| |||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 50332 AATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 50391 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 50392 TG 50393 || Sbjct 108422 TG 108423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718171797798560