Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq8589 176 4e-39 seq10743 84.2 2e-11 >seq8589 Length=14632 Score = 176 bits (194), Expect = 4e-39 Identities = 394/587 (67%), Gaps = 15/587 (3%) Strand=Plus/Plus Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 |||||||||||||| | || ||||| | | ||| | ||||| ||||||||||| || Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| || |||| ||| ||||||||||| || | | ||| | || || ||||||||| Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || || ||||| || || | || ||| |||| || | | ||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGA------ATCAGACTCAATC 5971 Query 14055 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14114 |||||| |||||||| | |||| |||| || | ||||||||||| ||| Sbjct 5972 CATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAAT 6031 Query 14115 AAATATTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 14172 || | || |||||| | | || | | || |||||||| | | ||| ||| Sbjct 6032 AATTTATCTTTCTCTACCTCATCTTTCACA--TAAGTATCAATCAAAAGAGAATAGGTTT 6089 Query 14173 CAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATT 14232 | || || || ||||| || ||||| ||||| || || ||||||| | ||| Sbjct 6090 CGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATT 6149 Query 14233 GTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 | ||||| | ||||| |||| || ||||||||||| || || || ||| || ||| Sbjct 6150 GCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCA 6208 Query 14292 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT---TTTTCCAA 14348 ||||| || || || | |||||||| |||| || || | || | || | ||||| Sbjct 6209 AAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAG 6268 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || | | ||| | | | ||||| ||| ||| | ||||||||||| || | |||| Sbjct 6269 TCTGTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTT 6328 Query 14409 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || ||| | |||| || || | || || ||||||| ||||| Sbjct 6329 TTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/241 (69%), Gaps = 10/241 (4%) Strand=Plus/Plus Query 13950 ttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCA 14009 || || | ||| || || |||||||| ||||| |||||||| || ||||| || |||||| Sbjct 107838 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 107897 Query 14010 AACGCTATTAATCGT-TCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAGCC 14066 || || || |||| | || ||||| |||||| | | | ||| ||||| || |||| Sbjct 107898 AAGGCGAT-AATCCTCTCGCCAAATGATGCTCTCTGGG--GATTGATCCAGTTCAGAGCC 107954 Query 14067 CATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT--ATTCCT 14124 || | | || || | | | || |||||| ||||||||||| || | || | | | Sbjct 107955 CAGTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTT 108014 Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||| | || ||| || | || || || | ||| ||||| |||||||| |||| Sbjct 108015 TCTGCCTTGTCTTTG--ATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGT 108072 Query 14185 T 14185 | Sbjct 108073 T 108073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479663212733600