Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq8589 179 4e-40 >seq8589 Length=14632 Score = 179 bits (198), Expect = 4e-40 Identities = 396/587 (67%), Gaps = 15/587 (3%) Strand=Plus/Plus Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 |||||||||||||| | || ||||| | | ||| | ||||| ||||||||||| || Sbjct 5798 GCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACCA 5857 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| || |||| ||| ||||||||||| || | | || | ||| || ||||||||| Sbjct 5858 GGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATATT 5917 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 || || || || ||||| || || |||| ||| |||| || | | | | ||| Sbjct 5918 CCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGA-----ATCAGACTCA-ATC 5971 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 |||||| |||||||| | |||| |||| || | ||| || |||| |||| Sbjct 5972 CATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAAT 6031 Query 13903 AAATGTTCCTTCTCT--TTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTT 13960 || | || |||||| | | || | | || |||||||| | | ||| ||| Sbjct 6032 AATTTATCTTTCTCTACCTCATCTTTCACA--TAAGTATCAATCAAAAGAGAATAGGTTT 6089 Query 13961 CAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATT 14020 | || || || || || || ||||| ||||| ||| || ||||||| | ||| Sbjct 6090 CGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATT 6149 Query 14021 GTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 | || || | ||||| ||||||| || |||||||| ||||| || ||| || ||| Sbjct 6150 GCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCA 6208 Query 14080 AAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTT---TTTTCCAA 14136 ||||| || || || | |||||||| |||| || || | || | || | ||||| Sbjct 6209 AAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAG 6268 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || | | ||| | | | ||||| ||| ||| | ||||||||||| || | |||| Sbjct 6269 TCTGTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTT 6328 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || ||| | |||| || || | || || ||||||| ||||| Sbjct 6329 TTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478524166582560