Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10493 105 5e-18 >seq10493 Length=264610 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||| ||| | ||| |||||| || | ||||| ||| | Sbjct 50877 CCTCCACGAAGGCGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50818 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| || |||| || | ||| ||||||||||| ||||| | |||||| || | || Sbjct 50817 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGG 50758 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||| ||||| || |||| |||| || | ||| |||||| | | || || Sbjct 50757 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 50698 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || || ||||| || |||||||| || ||||| |||||| Sbjct 50697 TCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCATT 50650 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | || |||| ||| | ||| |||||| || | ||||| || | Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| |||| || | ||| |||||||| || || | || ||||| |||| ||| Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || |||| | | | || || | | | || |||| | ||||| Sbjct 49389 ATGCCTTCTTTGTC-CTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGAC 49331 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || || ||||||||||| ||||| |||||||| || ||||| || Sbjct 49330 CTCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381319383634632