Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8589 251 1e-61 seq10803 134 2e-26 seq10743 114 2e-20 >seq8589 Length=14632 Score = 251 bits (278), Expect = 1e-61 Identities = 410/584 (70%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 ||| ||||| || |||| || ||||| | | |||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||||| || | || || | |||||| ||||| ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCA 42246 |||||| || || ||||| || |||||||| || || || || ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||| ||||| || || || |||||| || | | ||| || |||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 42307 ATAGtttttttCATTACT-ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTG 42365 | | ||| || | || |||||| ||||| ||||| ||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 42366 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTA 42425 |||||| || || || || |||||||| |||||| || | || |||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 42426 CTTCTGTA-CAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 |||| || |||||| ||| ||||||||||| ||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAATT-TTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 42485 AACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATT---TATTCCAATCA 42541 || || || | ||| || |||||||||||||| || |||||| | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 42542 TTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTA 42601 ||||||||| | | ||||| |||||| | |||||||| ||| || ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 42602 TACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 ||| | ||| |||||||||| | |||||| ||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10803 Length=2816097 Score = 134 bits (148), Expect = 2e-26 Identities = 220/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 ||| ||||| || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 72360 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 72419 || ||||||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 72420 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTA 72479 || || ||||| | ||| || || || || || ||||| |||||||||| || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 72480 CGTCTCAATAGCTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACA 72538 ||||||||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 72539 TATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAG 72598 | ||||| ||||| || | | |||| ||| || || | | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 72599 T-TTTAAAACCAA 72610 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 >seq10743 Length=1036592 Score = 114 bits (126), Expect = 2e-20 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 ||| || ||||| || || | ||||| || |||||||||||||| || ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 42258 |||||| |||| ||||| ||| | || || | || ||||| || ||||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 42259 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 42318 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 42319 ATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | ||||| | | ||||||| ||| || ||||| || || || ||||| Sbjct 108017 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 111 bits (122), Expect = 2e-19 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 ||| || ||||| || || | ||||| || |||||||||||||| || ||||| || || Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 42258 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 76783 Query 42259 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 42318 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 76782 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 76723 Query 42319 ATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | ||||| | | ||||||| ||| || ||||| || || || ||||| Sbjct 76722 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 76666 Score = 111 bits (122), Expect = 2e-19 Identities = 167/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 ||| || ||||| || || | ||||| || |||||||||||||| || ||||| || || Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 42258 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 90030 Query 42259 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 42318 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 90029 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 89970 Query 42319 ATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | ||||| | | ||||||| ||| || ||||| || || || ||||| Sbjct 89969 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 89913 Score = 109 bits (120), Expect = 7e-19 Identities = 166/236 (70%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 42143 TTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCA 42202 || || ||||| || || | ||||| || |||||||||||||| || ||||| || ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 42203 AAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCAA 42259 ||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 81824 AAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAG 81765 Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 81764 TGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTCT 81705 Query 42320 TTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | ||||| | | ||||||| ||| || ||||| || || || ||||| Sbjct 81704 GCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 105 bits (116), Expect = 9e-18 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 42142 CTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGC 42201 ||| || ||||| || || | ||||| || |||||||||||||| || ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 42202 AAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACTTTTGAGCCCA 42258 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 42259 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 42318 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 42319 ATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 63202 CGCCTTGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| || ||||| || |||||||| || |||||||| | || |||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || | || | | |||||| || || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 42497 TG 42498 || Sbjct 63608 TG 63609 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| || ||||| || |||||||| || |||||||| | || |||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || | || | | |||||| || || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 42497 TG 42498 || Sbjct 76405 TG 76404 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| || ||||| || |||||||| ||||||||||| | || |||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || | || | | |||||| || || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 42497 TG 42498 || Sbjct 81298 TG 81297 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| || ||||| || |||||||| || |||||||| | || |||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || | || | | |||||| || || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 42497 TG 42498 || Sbjct 89653 TG 89652 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAA 42436 ||||| || ||||| || |||||||| || |||||||| | || |||||||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 42437 AATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 42496 || | || | | |||||| || || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 42497 TG 42498 || Sbjct 108422 TG 108423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671048562651040