Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq10493 82.4 5e-11 >seq10493 Length=264610 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||| ||| | ||| ||||| || || || ||||| ||| || || || ||| || Sbjct 49491 ACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTCG 49432 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| || || || | | ||| ||||| | || ||||||||||| || | Sbjct 49431 AGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTGA 49372 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | ||||| || || ||| ||||| ||| | |||| || || | ||| || ||| Sbjct 49371 ATTTTCGCC---TTCACATTTTCGATCGTATCGCTCGGTTCGACCTCTAAAGTGATGGTT 49315 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||||| || ||||| || || || || |||||||| Sbjct 49314 TTTCCGGTCAGAGTCTTCACAAAGATCTGCATGTT 49280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318735625357992