Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq8589 230 2e-55 >seq8589 Length=14632 Score = 230 bits (254), Expect = 2e-55 Identities = 376/529 (71%), Gaps = 21/529 (4%) Strand=Plus/Plus Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 |||||||||||| |||| ||||||||| | | |||| |||||| |||||||||| ||| Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 ||||| | ||||| ||| || | |||||| |||| | ||||| || || || ||||| Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTAT 13332 |||||| || |||||||| || || | |||||| || | | | | | ||| || Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAA------TCAGACTCAAT 5970 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTT-TGTTTAACGCAGTTCATATTTTCTATTGCGTTAA 13391 ||| ||| ||||| | ||||||| | |||| || | | | ||| || || | | Sbjct 5971 CCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACA-CTTCAATAGCATGGA 6029 Query 13392 ATAAATAAtttttttCCTTACT-GTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 |||| | || ||| | || || ||| | ||||||||| ||||| | ||| || Sbjct 6030 ATAATTTATCTTTCT-CTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTT 6088 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG-ATAC 13509 || ||||||||| |||||| ||||| || ||||| ||| || |||| || | ||| Sbjct 6089 TCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATA- 6147 Query 13510 CTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 || ||||| | ||||| |||||||||| ||||| || || ||||||||| |||| Sbjct 6148 TTGCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAG 6206 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTC---TGACAACTTTAACC 13625 |||||||||| | || ||||||||||| | |||||| | ||| | | | | || Sbjct 6207 CAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCC 6266 Query 13626 AATCTGGAAAATCTTTTGAT--AAATCTACCTCCTCAACGGTCCAAAAA 13672 | |||| | ||| ||||| ||||||| || ||| | ||||||||| Sbjct 6267 AGTCTGTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAA 6313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430925650931208