Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq10485 174 4e-38 seq10777 158 3e-33 seq8589 138 3e-27 seq10743 109 1e-18 seq10391 98.7 2e-15 seq10646 93.3 1e-13 seq10338 93.3 1e-13 >seq10485 Length=261005 Score = 174 bits (192), Expect = 4e-38 Identities = 179/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| || | || || || || | || || |||||||| || || ||||| Sbjct 97663 ATTCCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 97604 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||| || ||||| |||||||| ||||| ||||||| | |||||| || || Sbjct 97603 CTCAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGG 97544 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||| |||||||| | ||||||||||| || Sbjct 97543 GGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCA 97484 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| || |||||||| ||||| |||||||| ||||| || |||||| || Sbjct 97483 ACTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCATTATG 97430 Score = 129 bits (142), Expect = 1e-24 Identities = 175/242 (72%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 104322 CTTTA-TTTA--TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAA 104378 ||||| |||| |||| ||||| || | || || | || | || || |||||||| | Sbjct 98130 CTTTAGTTTAGTTTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGA 98071 Query 104379 TATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCT 104438 | || ||||| || |||| || ||||| ||||||||||| || || || | | || Sbjct 98070 TGTTGTAGTCGCTAAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCT 98011 Query 104439 GTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTAT 104498 |||| || || || || ||||| || || ||||| || ||||| ||||| || | || | Sbjct 98010 GTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGT 97951 Query 104499 CGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 |||| ||||| || ||||| || || || || || || || || || ||||| || |||| Sbjct 97950 CGCTTGGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCA 97891 Query 104559 TT 104560 || Sbjct 97890 TT 97889 >seq10777 Length=1546546 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| |||| || | || || || || | || || |||||||| || || ||||| Sbjct 767695 ATTCCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCG 767636 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 ||| |||| || ||||| || |||||||| || ||||||| | |||||| || || Sbjct 767635 CTTAGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGG 767576 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || ||||||||||| || | || || ||||| || Sbjct 767575 GGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCG 767516 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || ||||| |||||||| |||||||| ||||| || ||||| Sbjct 767515 ACTTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 767466 >seq8589 Length=14632 Score = 138 bits (152), Expect = 3e-27 Identities = 369/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATG-TACAAACAGGCCGTTGC 268761 ||||| || |||||||| ||||| |||||| ||| | ||| |||||| | | || Sbjct 6375 TTTGTCATTTTTCCAATTAAGCATCATGATATTTGG-GAATGGTACAAAAAAATGGAGGC 6317 Query 268762 TTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAA---AAA 268818 ||||||||||| |||||| ||||| || | | || | | ||| ||||| || Sbjct 6316 AAGTTTTTGGACTGCTGAAGAAATAGATTTGCATCAAGATATCACAGACTGGAACACGAA 6257 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGA 268878 ||||| ||| |||| | ||||| ||||| | || |||||||| | ||| Sbjct 6256 ATTAAATGAAGATGAAAAATATTTTATTAAGCATATTTTAGCTTTTTTTGCTGCATCTGA 6197 Query 268879 TGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA-GAGGTACAGATTCCTGAAG 268937 || || || || |||||| ||| ||| || || ||| || || || || | | |||| Sbjct 6196 CGGGATTGTGAATGAAAATTTAGCAGA-AAATTTTGTTAATGAAGTGCAATATGCCGAAG 6138 Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997 | | || ||| || ||||| || || || || ||||||||| || | || || Sbjct 6137 CTAAATTTTTCTATGGATTTCAAATTATGATGGAGAATATTCATAGCGAAACCTATTCTC 6078 Query 268998 TATTAATAGATACTTATATAGATGATAACAACGA-AAAGAAAAGACTATTTTCTTCTATG 269056 | || || ||||||||| | | ||| | || ||||| || | |||| | |||| Sbjct 6077 TTTTGATTGATACTTATGTGAAAGATGAGGTAGAGAAAGATAA-ATTATTCCATGCTAT- 6020 Query 269057 AGAACTATGGACTG-TGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGATAG 269115 ||| | | | | | | || |||| | |||||||| | |||||||| || Sbjct 6019 TGAAGTGTTTCCAGCAATAAAAAGAAAAGCAGAATGGGCATTAAAATGGAT---TGAGTC 5963 Query 269116 CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 | ||| | ||||| | | || ||||| ||||| ||||| |||||||| || || Sbjct 5962 TGATTCTTTTGCTGAAAGACTTATCGCATTTGCAGCTGTGGAAGGAATATTCTTCTCAGG 5903 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTC 269235 | ||| |||| |||||||| ||||||||||| | ||||| || ||||| || || Sbjct 5902 AGCGTTTTGTTCTATTTTTTGGTTAAAGAAAAGAGGGTTAATGCCTGGTTTAACATTTTC 5843 Query 269236 TAACGAATTGAT 269247 |||||| || || Sbjct 5842 TAACGAGTTAAT 5831 >seq10743 Length=1036592 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||| | || ||||| ||||| || |||||||| |||||| ||||||||| Sbjct 63600 GCATTCTTTGCGGCCAGCGATGGCATCGTCAATGAAAATCTTGTAGAGTGCTTCTGTCAA 63541 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 || |||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 63540 GAAGTACAGATTCCTGAGGCCAGGTGCTTCTACGGCTTCCAGATTGCTATTGA 63488 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||| | || ||||| ||||| || |||||||| |||||| ||||||||| Sbjct 76413 GCATTCTTTGCGGCCAGCGATGGCATCGTCAATGAAAATCTTGTAGAGTGCTTCTGTCAA 76472 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 || |||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 76473 GAAGTACAGATTCCTGAGGCCAGGTGCTTCTACGGCTTCCAGATTGCTATTGA 76525 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||| | || ||||| ||||| || |||||||| |||||| ||| ||||| Sbjct 81306 GCATTCTTTGCGGCCAGCGATGGCATCGTCAATGAAAATCTTGTAGAGTGCTTCAGTCAA 81365 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 || |||||||||||||| |||||||| || ||||| |||||||| ||||| || Sbjct 81366 GAAGTACAGATTCCTGAGGCCAGATGCTTCTACGGCTTCCAGATTGCTATTGA 81418 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||| | || ||||| ||||| || |||||||| |||||| ||||||||| Sbjct 89661 GCATTCTTTGCGGCCAGCGATGGCATCGTCAATGAAAATCTTGTAGAGTGCTTCTGTCAA 89720 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 || |||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 89721 GAAGTACAGATTCCTGAGGCCAGGTGCTTCTACGGCTTCCAGATTGCTATTGA 89773 Score = 105 bits (116), Expect = 2e-17 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||| | || ||||| ||||| || |||||||| |||||| ||| ||||| Sbjct 108414 GCATTCTTTGCGGCCAGCGATGGCATCGTCAATGAAAATCTTGTAGAGTGCTTCAGTCAA 108355 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 || |||||||||||||| ||||| || || ||||| |||||||| ||||| || Sbjct 108354 GAAGTACAGATTCCTGAGGCCAGGTGCTTCTACGGCTTCCAGATTGCTATTGA 108302 >seq10391 Length=168036 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || ||||| || | ||| |||||||| || ||||| Sbjct 55899 CCTTCCTTATCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCGCTAGGCTCAACCTCA 55840 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || ||||| ||||| |||||||| Sbjct 55839 AGGGTGATGGTTTTACCCGTCAGGGTTTTGACAAAAATCTGCAT 55796 >seq10646 Length=461484 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || ||||| || | ||| |||||||| || ||||| Sbjct 167380 CCTTCCTTATCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCGCTAGGCTCAACCTCA 167321 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || ||||| || || |||||||| Sbjct 167320 AGGGTGATGGTTTTACCCGTCAGGGTTTTGACGAAAATCTGCAT 167277 >seq10338 Length=139870 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| || || ||||| || | ||| |||||||| || ||||| Sbjct 97526 CCTTCCTTATCCTGAATCTTAGCCTTGACATTCTCGATGGTGTCGCTAGGCTCAACCTCA 97467 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || ||||| || || |||||||| Sbjct 97466 AGGGTGATGGTTTTACCCGTCAGGGTTTTGACGAAAATCTGCAT 97423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151239016237232