Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1352 1191 0.0 seq10473 255 4e-63 seq10776 174 1e-38 seq9826 163 2e-35 seq10800 145 5e-30 seq2361 105 4e-18 >seq1352 Length=1244 Score = 1191 bits (1320), Expect = 0.0 Identities = 674/683 (99%), Gaps = 0/683 (0%) Strand=Plus/Plus Query 22626 GGTAATGACTCAAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 22685 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 562 GGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTC 621 Query 22686 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 22745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 622 ATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTG 681 Query 22746 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 22805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 CCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAG 741 Query 22806 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 22865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 742 CTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTC 801 Query 22866 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATCGTGCGTTCACCGAATAC 22925 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 802 AAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATAC 861 Query 22926 GTGCGCAACAACCGTCTTCCGGAGCCTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 22985 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 862 GTGCGCAACAACCGTCTTCCGGAGACTGTCATACGCGTAAAACAGCCAGCGCTGGCGCGA 921 Query 22986 TTTAGCCCCGACGTATCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 23045 |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 922 TTTAGCCCCGACATAGCCCCACTGTTCGTCCATTTCCGCGCAGACGATGACGTCACTGCC 981 Query 23046 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAATGGCGGAAAATCGTG 23105 |||||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct 982 CGGCTGTATGCGCGAGGTTACCGACTGCGGCCTGAGTTTTTTAAGTGACGTAAAATCGTG 1041 Query 23106 TTGAGGCCAACGCCCATAATGCGGGCGGTTGCCCGGCATCCAACGCCATTCATGGCCATA 23165 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1042 TTGAGGCCAACGCCCATAATGCGGGCTGTTGCCCGGCATCCAACGCCATTCATGGCCATA 1101 Query 23166 TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCAT 23225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 TCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCAT 1161 Query 23226 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGC 23285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 GTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGC 1221 Query 23286 ACCACCCCGTCAGTAGCTGAACA 23308 ||||||||||||||||||||||| Sbjct 1222 ACCACCCCGTCAGTAGCTGAACA 1244 >seq10473 Length=248406 Score = 255 bits (282), Expect = 4e-63 Identities = 142/143 (99%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 23251 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 23310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 159937 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 159996 Query 23311 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAA 23370 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 159997 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCANAAACACCATCATACACTAA 160056 Query 23371 ATCAGTAAGTTGGCAGCATCACC 23393 ||||||||||||||||||||||| Sbjct 160057 ATCAGTAAGTTGGCAGCATCACC 160079 >seq10776 Length=1506508 Score = 174 bits (192), Expect = 1e-38 Identities = 96/96 (100%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 23251 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 23310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1016939 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 1016998 Query 23311 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAC 23346 |||||||||||||||||||||||||||||||||||| Sbjct 1016999 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCAC 1017034 >seq9826 Length=41569 Score = 163 bits (180), Expect = 2e-35 Identities = 278/396 (70%), Gaps = 9/396 (2%) Strand=Plus/Plus Query 72237 GAAAATGGTG-GTTTGAGCATGATTATGATCGACTACCTGCAACTTATGCGCGTCCCCGA 72295 ||| | |||| | ||| || |||| ||| ||||||||||||| || |||| | || | Sbjct 102 GAACACGGTGAGATTG-GCCTGATCATGGTCGACTACCTGCAGCTGATGCAGATTCCTG- 159 Query 72296 GCTGCAA----GATAACCGAACGCTGGAAATTGCCGAGATTTCTCGCTCACTGAAGGCGT 72351 ||| || || | ||| | || ||| |||| || || ||||| || || || Sbjct 160 GCTCCAGCGGCGACAGTCGAGTGAATGAGATTTCCGAAATCTCCCGCTCGCTCAAAGCCC 219 Query 72352 TGGCGAAGGAATTACAAGTACC-GGTGGTGGCATTGTCACAACTTAATCGATCGCTTGAA 72410 |||| || ||||| ||| | || |||| | || |||| || ||||| || || || Sbjct 220 TGGCCAAAGAATT-CAACTGCCCGGTGATTGCCCTGTCGCAGCTTAACCGTGGCCTGGAG 278 Query 72411 CAGCGTGCGGACAAACGACCGGTAAATTCAGATTTACGTGAATCAGGAGCAATTGAGCAG 72470 ||||| | ||||||| ||| | || || || || || ||||| || ||||| |||||| Sbjct 279 CAGCGCCCTAACAAACGCCCGATCAACTCCGACTTGCGCGAATCCGGGGCAATCGAGCAG 338 Query 72471 GACGCAGACCTGATTATGTTTCTGTATCGCGACGAAGTTTATCACCCGGATAGCGAAATG 72530 ||||| ||| | || ||||| | || |||||||| || |||||||| || | ||| Sbjct 339 GACGCCGACATCATCATGTTCGTTTACCGCGACGAGGTGTATCACCCCGAGACCGAGTAC 398 Query 72531 AAGGGCATTGCCGAGGTAATTATCGGAAAGCAACGAAATGGCCCAATTGGCACGGTGAGA 72590 |||||| | ||||| | |||||||| ||||| || || ||||| | || |||| | Sbjct 399 AAGGGCGTGGCCGAAATCATTATCGGCAAGCAGCGTAACGGCCCGCTGGGTACGGCACGG 458 Query 72591 TTGGCTTTTAACGGCCAATACTCACGGTTTGATAAC 72626 |||| ||| |||| | | ||| || ||||| ||| Sbjct 459 CTGGCGTTTCTCGGCAAGTTCTCGCGCTTTGAGAAC 494 >seq10800 Length=2658636 Score = 145 bits (160), Expect = 5e-30 Identities = 80/80 (100%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 23251 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 23310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2657515 AGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGG 2657456 Query 23311 AGGGACAGCTGATAGAAACA 23330 |||||||||||||||||||| Sbjct 2657455 AGGGACAGCTGATAGAAACA 2657436 >seq2361 Length=2839 Score = 105 bits (116), Expect = 4e-18 Identities = 224/334 (67%), Gaps = 3/334 (1%) Strand=Plus/Minus Query 21060 CGCGGTGTAAACAAAGTCATCCTGATTGGTACCCTGGGGCAAGACCCGGAGATCAGGTAT 21119 || || || ||||||||||| ||| | || ||| || || |||||||| | | || Sbjct 2295 CGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGCGGACAGGACCCGGAAACTCGCTAC 2236 Query 21120 ATACCAAATGGCGGCGCGGTCGGAAGACTCAGCATCGCAACGAATGAATCATGGCGCGAC 21179 | |||| ||| ||||||| | || ||| | || || | || ||| |||| Sbjct 2235 CTGCCAAGCGGCAACGCGGTCACCAACCTGAGCCTGGCGACCAGCGAGCAGTGGACCGAC 2176 Query 21180 AAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTGTTCGGAAAA 21239 ||||| || ||||| || ||| |||| || ||||| || ||||||| || Sbjct 2175 AAGCAGACTGGCCAGAAGGTCGAGAAAACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAG 2116 Query 21240 CTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATCGAAGGGAAA 21299 |||| || ||||| | ||||| | || |||||||| ||||| || ||||| || || Sbjct 2115 GTTGCCGAGATTGCTGGCGAGTACCTGCGCAAAGGTTCGCAGGTATATATCGAGGGCAAG 2056 Query 21300 CTTAAAACCCGTAAGTGGACAGATGACGCCGGTGTAGAACGTTACACGACGGAAATTATC 21359 || | ||||| ||||| || | | ||| || | || ||||| || ||||| ||| Sbjct 2055 CTGCAGACCCGCGAGTGG---GAAAAAGACGGCGTTAAGCGCTACACCACCGAAATCATC 1999 Query 21360 GTCAGCCAGGGCGGCACCATGCAAATGATCGGCG 21393 ||| | | ||||||||||| || | |||| Sbjct 1998 GTCGACATGCAGGGCACCATGCAGCTGCTTGGCG 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303195271884084