Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10485 131 2e-25 seq10777 122 8e-23 seq10493 113 4e-20 >seq10485 Length=261005 Score = 131 bits (144), Expect = 2e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||||||| | ||| || || || || | ||| | Sbjct 97896 TTTGCATTCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGT 97837 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||| | || | ||| || |||||||||||| | ||||| | || ||| || | Sbjct 97836 AGTCGCTAAGGGTTCGGCCATCTTCTAGCTGTTTTCCGGCGAAGATGAGTCGTTGTTGGT 97777 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||| ||||| | |||||| || || || ||| ||||| || | Sbjct 97776 CTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGTC-GCTT 97718 Query 94953 GGT-CGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | || || | ||||||||||| || || || || ||||||||||| ||||| Sbjct 97717 GGTTCAACTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97662 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||||||||| | || | |||||||| | ||| || || || || | ||| || ||||| Sbjct 98117 TCCTCCTCTGAGACGTAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGCT 98058 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 | || | ||| || || ||||||||| | ||||| || | || || ||||| || Sbjct 98057 AAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAAACGCTGTTGGTCTGGGGG 97998 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGT-CGA 94958 ||| ||||| ||||| | |||||| || || || ||| ||||| || |||| | | Sbjct 97997 AATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTCTCGATTGTGTC-GCTTGGTTCAA 97939 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||||||||| || || || || ||||||||||| ||||| Sbjct 97938 CTTCTAGAGTGATGGTTTTCCCGGTCAGGGTCTTCACAAAGATTTGCAT 97890 Score = 98.7 bits (108), Expect = 9e-16 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||| | || | |||| ||| | || || || || || | ||| | Sbjct 97668 TTTGCATTCCTCCTCTGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGT 97609 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| || | ||| || || ||||| || | || ||||| | || || | Sbjct 97608 AGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGT 97549 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||| ||||| ||||| | |||||| || || || ||| || || || Sbjct 97548 CTGGGGGAATGCCTTCCTTGTCTTGAATTTTAGCTTTCACATTTTCGATCGTATC-GCTA 97490 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||||| || || ||||| || |||||||||||||| ||||| Sbjct 97489 GGCTCAACTTCTAGGGTGATAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 >seq10777 Length=1546546 Score = 122 bits (134), Expect = 8e-23 Identities = 171/238 (72%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | || | |||| ||| | || || || || || | ||| | Sbjct 767700 TTTGCATTCCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGT 767641 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||||| ||| ||| | ||| || |||||||||||| | || ||||| | || || Sbjct 767640 AGTCGCT--TAGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTG 767583 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||||| ||||| ||||| ||||| | |||||| || || || ||| |||||| Sbjct 767582 GTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACT 767523 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| || | ||||| ||||| ||||| || |||||||||||||| |||||| Sbjct 767522 AGGCTCGACTTCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCATG 767465 >seq10493 Length=264610 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || || |||| ||| || || || || || ||| Sbjct 49479 GTGGACTCCTTCTGGATGTTGTAGTCACTCAGTGTGCGTCCGTCTTCGAGTTGCTTGCCG 49420 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | |||||| || || || ||||| ||||||||||| | |||||| ||||| Sbjct 49419 GCGAAGATAAGTCTTTGTTGGTCGGGCGGAATGCCTTCTTTGTCCTGAATTTTCGCCTTC 49360 Query 94931 ACGGCGCCGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 || ||| || || || || ||||| || | |||||||||||||| || ||||| Sbjct 49359 ACATTTTCGATCGTATC-GCTCGGTTCGACCTCTAAAGTGATGGTTTTTCCGGTCAGAGT 49301 Query 94990 TTTCACAAAGATCTGCATG 95008 |||||||||||||||||| Sbjct 49300 CTTCACAAAGATCTGCATG 49282 Score = 109 bits (120), Expect = 5e-19 Identities = 172/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||||||||||| || | |||| || | || || ||||| || | | Sbjct 50661 AAAATCTGCATTCCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATG 50602 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || || |||||| ||||| || || || || || || ||| | ||||| || |||| Sbjct 50601 TTGTAGTCGCTC--AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTT 50544 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 |||| ||||| || ||||| |||||||| | || || || || || | | |||| Sbjct 50543 GCTGGTCTGGTGGGATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGT 50484 Query 94947 CAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||| || || || | |||||||| |||||||| ||||| || || || |||||| Sbjct 50483 CA-CTTGGTTCAACTTCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGC 50425 Query 95006 AT 95007 || Sbjct 50424 AT 50423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230658273440