Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq2361 158 5e-34 seq1102 98.7 4e-16 >seq2361 Length=2839 Score = 158 bits (174), Expect = 5e-34 Identities = 245/345 (71%), Gaps = 9/345 (3%) Strand=Plus/Plus Query 11164 GCCGCCGAGCAGTTGCATGTTGCCGTTGATGTCGACCACTACCTCGGTGCTGTAGTGGTC 11223 |||||| ||||| |||||| |||| | |||||||| | | |||||| ||||| | | Sbjct 1963 GCCGCCAAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATTTCGGTGGTGTAGCGCTT 2022 Query 11224 CTGGCCGTCCTGGCCCTGCCACTTGCGGGTGCGTAGGCTGCCTTCGATGTAGACCTGGGA 11283 |||||| | || |||| |||||| | || |||| ||||| || ||||| || Sbjct 2023 AACGCCGTCTTTTTCC---CACTCGCGGGTCTGCAGCTTGCCCTCGATATATACCTGCGA 2079 Query 11284 GCCCTTTCGCAGGTATTGCGCTGCGATTTCGGCCAGCCGGCCAAAGAGCACGACCCGGTG 11343 || || |||||||| | | || || ||||| | | ||| || ||| || ||||| Sbjct 2080 ACCTTTGCGCAGGTACTCGCCAGCAATCTCGGCAACCTTGCCGAACAGCGACACACGGTG 2139 Query 11344 CCACTCGGTGCGCTCCTGCTGCTGGCCGGTCTGCTTGTCTTTCCAGCTTTCGCTAGTGGC 11403 ||||||||| ||| || |||||| ||||||||||| |||| ||||| || || Sbjct 2140 CCACTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCACTGCTCGCTGGTCGC 2199 Query 11404 CAGACTGAGGGAGGTGACCGCCTTTCCGCCCGG--GGTAGATCTTGCGTCTGGATCCTGG 11461 ||| || ||| ||||||||| || |||| || ||||| | | || || ||||| Sbjct 2200 CAGGCTCAGGTTGGTGACCGCGTTGCCGCTTGGCAGGTAG--CGAGTTTCCGGGTCCTGT 2257 Query 11462 CC-CAGATGGCCGACCAGGATTACCTTGTTCACTCCGCGTGCCAT 11505 || ||| | ||||||||| || || ||||| || || || ||||| Sbjct 2258 CCGCAGGT-GCCGACCAGAATGACTTTGTTAACCCCACGGGCCAT 2301 >seq1102 Length=1192 Score = 98.7 bits (108), Expect = 4e-16 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 3972 CACTCCCTCTGCCAACGCCTGCTCTTCGCTGATGTCCTGCAGCCGCTCGACGCGTACGTC 4031 ||| |||||||| ||| | || ||||||||||||||||| ||||||| ||| ||| | Sbjct 392 CACGCCCTCTGCTGCCGCGTCCTGATCGCTGATGTCCTGCAGGCGCTCGATGCGCACGGC 451 Query 4032 GGTGATCTCAAGCAGGATGCGGGAGGCCCAACGCGGCATATGGATGCTCGGC 4083 |||| || ||| ||| ||| |||||| |||||||| |||||||||||| Sbjct 452 CTTGATGTCGAGCGTGATACGGCTGGCCCAGCGCGGCATGTGGATGCTCGGC 503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208471746128464