Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq10795 84.2 4e-12 >seq10795 Length=2111185 Score = 84.2 bits (92), Expect = 4e-12 Identities = 224/331 (68%), Gaps = 15/331 (5%) Strand=Plus/Minus Query 3937 GATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATAC 3996 ||||| | || ||| ||||||| ||||||||||| ||| | |||| |||||| || Sbjct 1021863 GATGTGTTACTTTTGGCTGATGTTTTTGAAAACTTCAGAGATGTTTGTCTCAAGAACTAT 1021804 Query 3997 AATTTAGACGCACTACACTTTTATACAGCACCAGGTCT---TTCGAACGCTGCAATGTTA 4053 | ||||| || | || |||||||| || || || | |||| || || | Sbjct 1021803 GGTCTAGACCCAGCCTGGTACTACACAGCACCCGGACTAGCTTGGGACGCAGCCTTG--A 1021746 Query 4054 AAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAA 4113 || | || |||||| | | || |||||||||||| ||| ||| | ||| | | || Sbjct 1021745 AAAAAAAC-GAAGTAAAGTTAGAGCTGTTAACTGATTATGACATGTTACTTATGGTCGAG 1021687 Query 4114 AAGGGTGTTCGCGGTGGGGTATCGATG-TGTGCTAATAGACATGCTGAAGCTAACAACCG 4172 || || |||| || || || || ||| | || ||||| ||| |||| || |||| Sbjct 1021686 AAAGGCATTCGTGGGGGTGTCTCCATGATAAGC-AATAGGTATGGGAAAGCAAATAACCC 1021628 Query 4173 GTATATGGGCAAAGATTTTGA-TTCAAACAACCC-CGAAACATACCTGATGTACTATGAT 4230 |||||| ||||| | ||| ||| |||||| | ||| ||| | || | || |||| Sbjct 1021627 CTATATG---AAAGAGTATGACCCCAACCAACCCACAAAATATATCACATAT-CT-TGAT 1021573 Query 4231 GTAAATAATTTGTATGGCGCAGCGATGAGTA 4261 | ||| || || || ||| || ||||||| Sbjct 1021572 GCAAACAACTTATACGGCTGGGCAATGAGTA 1021542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97961830129416