Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq2361 80.6 8e-11 >seq2361 Length=2839 Score = 80.6 bits (88), Expect = 8e-11 Identities = 198/300 (66%), Gaps = 3/300 (1%) Strand=Plus/Plus Query 32899 GCCACCAAGCATTTGCATGGTTCCACTAACGCCAACGATGACTTCGGTAGTGAACCGATT 32958 ||| ||||||| |||||||| || | | | ||||||| |||||| ||| | || || Sbjct 1963 GCCGCCAAGCAGCTGCATGGTGCCCTGCATGTCGACGATGATTTCGGTGGTGTAGCGCTT 2022 Query 32959 CTGTCCACTTTGGTCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGA 33018 || || ||| || | | ||| ||| ||||| || | ||| |||| || Sbjct 2023 AACGCCGTCTTTTTCC---CACTCGCGGGTCTGCAGCTTGCCCTCGATATATACCTGCGA 2079 Query 33019 GCCTTTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATCACCACACGGTG 33078 ||||| ||||| ||||||| ||||| || || | || ||| || | ||||||||| Sbjct 2080 ACCTTTGCGCAGGTACTCGCCAGCAATCTCGGCAACCTTGCCGAACAGCGACACACGGTG 2139 Query 33079 CCACTCCGTCTGCTCCTTTTGCTCGCCAGTATTTTTATCTCGCCATTGTTCTGACGTAGC 33138 |||||| || | ||| | || |||||| | || || ||| || || || || Sbjct 2140 CCACTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCACTGCTCGCTGGTCGC 2199 Query 33139 TATTGTCAGGTTAGCGAACGCTGTTCCTGATGGTGAGTATCTAACTTCCGGGTCTTGTCC 33198 | ||||||| | || ||| | || ||| ||| | | ||||||||| ||||| Sbjct 2200 CAGGCTCAGGTTGGTGACCGCGTTGCCGCTTGGCAGGTAGCGAGTTTCCGGGTCCTGTCC 2259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149939160712176