Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq8589 194 2e-44 >seq8589 Length=14632 Score = 194 bits (214), Expect = 2e-44 Identities = 418/622 (67%), Gaps = 23/622 (4%) Strand=Plus/Plus Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||||||||||||||| |||||||| | | ||||| || ||||||||||||||||| Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 |||||||| ||||| || ||||||||||| || || ||| |||||||| ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATAT 21657 || || || || |||||||| | | || |||| | | ||| || | | || Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAA---AGAATC---AGACTCAAT 5970 Query 21658 CCATTTTTCTGCCCATTTTGCCTTT-TCTTTAATAC---AATCAATTGTATCAATAGCTT 21713 ||||||| |||||||| ||| ||| | |||| | | || || | |||||||| | Sbjct 5971 CCATTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACT----TCAATAGCAT 6026 Query 21714 TTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACA 21773 || | | || ||| || | |||| | | | ||| Sbjct 6027 GGAATAATTTATCTTTCTCTACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGG 6086 Query 21774 TTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAAC 21833 |||| ||| ||||| || ||| || |||||||| || ||| || | || || | | Sbjct 6087 TTTCGCTATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCAT 6146 Query 21834 ATTGAACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCG 21892 |||| || || || ||||| || || || |||||||| || || || ||| || Sbjct 6147 ATTGCACTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCA 6205 Query 21893 GCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATT---TTTTC 21949 |||||||| || || |||| || ||||||||| ||| | || |||||| | ||| Sbjct 6206 GCAAAAAAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTC 6265 Query 21950 CAATCTAATAAATCTTTTGAT--AAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAG 22007 || ||| | ||| ||||| ||||||| |||||||| |||||||| || || Sbjct 6266 CAGTCTGTGATATC--TTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCA 6323 Query 22008 CCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTTAT 22067 ||||| ||| ||| ||||||| || | |||||||| || ||||| | || | Sbjct 6324 TTTTTTTGTACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAAACGGTCCT 6383 Query 22068 TTGATTCAACTAAAAGTGGTTC 22089 | ||| ||||| |||||| Sbjct 6384 TGTTTTCTTGTAAAATTGGTTC 6405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531828966796960