Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8589 233 2e-56 seq10743 127 3e-24 seq10803 125 9e-24 >seq8589 Length=14632 Score = 233 bits (258), Expect = 2e-56 Identities = 406/584 (70%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 33306 TGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCC 33365 ||| ||||| || |||| || || || | | ||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 33366 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGAT 33425 ||||||| || | || || | |||||| || ||| || | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 33426 TCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCA 33485 |||||| || || ||||| || |||||||| || || || | ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 33486 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 ||| ||||| || || || |||||| || | | ||| || |||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 33546 ATAGtttttttCATTACT-ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCG 33604 | | ||| || | || |||||| ||||||||||| ||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 33605 AATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 33664 |||||| || || || || |||||||| |||||| || |||| |||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 33665 CTTC-TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 |||| | ||||||| ||| || |||||||||||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 33724 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCA 33780 || || || | ||| || |||||||||||||| ||| ||| || | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 33781 TTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33840 ||||||||| | | ||||| |||||| | |||||||| |||||| ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 33841 TACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||| | ||| || |||| || | ||||| ||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10743 Length=1036592 Score = 127 bits (140), Expect = 3e-24 Identities = 173/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 33381 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 ||| || ||||| || |||| ||| || || |||||||||||||| || ||||| ||||| Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 33497 |||||| |||| ||||| ||| | || || | || ||||| || ||||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 33558 ATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | ||||| || || | ||||||| ||| || ||||| || || || ||||| Sbjct 108017 TGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 33381 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 ||| || ||||| || |||| ||| || || |||||||||||||| || ||||| ||||| Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 33497 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 76783 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 76782 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 76723 Query 33558 ATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | ||||| || || | ||||||| ||| || ||||| || || || ||||| Sbjct 76722 TGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 76666 Score = 122 bits (134), Expect = 1e-22 Identities = 172/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 33381 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 ||| || ||||| || |||| ||| || || |||||||||||||| || ||||| ||||| Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 33497 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 90030 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 90029 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 89970 Query 33558 ATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | ||||| || || | ||||||| ||| || ||||| || || || ||||| Sbjct 89969 TGCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 89913 Score = 120 bits (132), Expect = 4e-22 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 || || ||||| || |||| ||| || || |||||||||||||| || ||||| |||||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCAA 33498 ||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 81824 AAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAG 81765 Query 33499 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 33558 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 81764 TGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTCT 81705 Query 33559 TTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | ||||| || || | ||||||| ||| || ||||| || || || ||||| Sbjct 81704 GCCTTGTCTTT--GATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 118 bits (130), Expect = 1e-21 Identities = 171/239 (72%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 33381 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGC 33440 ||| || ||||| || |||| ||| || || |||||||||||||| || ||||| ||||| Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 33441 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 33497 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 33498 ATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttC 33557 | |||||||| | ||||||||||| || || || ||||| || |||| | |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 33558 ATTACTATCTTTAACATAAG--TATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 | ||||| || || | || |||| ||| || ||||| || || || ||||| Sbjct 63202 CGCCTTGTCTTT--GATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| || ||||| || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 33736 TG 33737 || Sbjct 63608 TG 63609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| || ||||| || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 33736 TG 33737 || Sbjct 76405 TG 76404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| || ||||| || |||||||| ||||| ||||| | ||||||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 33736 TG 33737 || Sbjct 81298 TG 81297 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| || ||||| || |||||||| || || ||||| | ||||||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 33736 TG 33737 || Sbjct 89653 TG 89652 Score = 96.9 bits (106), Expect = 4e-15 Identities = 167/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 33135 TCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 33194 |||||| || || || || ||||| | |||||| |||| ||||| || || || || Sbjct 90881 TCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGCTT 90822 Query 33195 AACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGA 33254 ||||||||||| | || || || || || |||||| || ||||| | || || Sbjct 90821 GACTGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATTCC 90762 Query 33255 TCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATC 33314 |||||| || || ||| || || | || | || ||||||| || || || || Sbjct 90761 TCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAGTC 90702 Query 33315 GCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAG 33374 ||| || ||||| || ||||| || || || || || || || || || || ||||| || Sbjct 90701 GCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATAAG 90642 Query 33375 GCC 33377 || Sbjct 90641 TCC 90639 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 33616 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33675 ||||| || ||||| || |||||||| || || ||||| | ||||||||||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 33676 AATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33735 || | || | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 33736 TG 33737 || Sbjct 108422 TG 108423 >seq10803 Length=2816097 Score = 125 bits (138), Expect = 9e-24 Identities = 218/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 ||| ||||| || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 || || |||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || || ||||| | ||| || || || || || ||||| |||||||| | || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 63674 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63732 ||||||||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 63733 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63792 ||||||| ||||| || | | |||| || || || | | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 63793 T-TTTAAAACCAA 63804 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622863070980640