Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq10485 122 7e-23 seq10493 105 6e-18 >seq10485 Length=261005 Score = 122 bits (134), Expect = 7e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || ||||||| | ||||| |||||| | ||||| || | || ||| | ||||| ||| | Sbjct 97430 CATAATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCC 97489 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||| || ||||| | || ||| || ||| ||||| |||||||| || || || Sbjct 97490 TAGCGATACGATCGAAAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGA 97549 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | | |||| || || || ||||||||||||| | ||| | | ||||| || Sbjct 97550 CCAACAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTA 97609 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || ||||| || || |||| | || || | | ||||||||| Sbjct 97610 CAACATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCAGAGGAGGA 97661 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | || || ||| | || || | ||||| || | | Sbjct 97889 AATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAG 97948 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| |||||| | || ||| || ||| ||||| |||||||| || || || || Sbjct 97949 CGACACAATCGAGAATGTGAAAGCTAAAATTCAAGACAAGGAAGGCATTCCCCCAGACCA 98008 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| | | || | || ||| || ||||||||||||| | ||| | | ||||| || || Sbjct 98009 ACAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACAA 98068 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || |||| || || || | | ||||||||| Sbjct 98069 CATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGGA 98117 >seq10493 Length=264610 Score = 105 bits (116), Expect = 6e-18 Identities = 155/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 23982 CCAAAC--AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAG 24039 |||||| || ||||| | ||||| || || | || |||||| | || || | || | Sbjct 49272 CCAAACTCAACATGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGAGG 49331 Query 24040 TCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATAC 24099 |||| | | ||| || ||||| | || || || ||| |||||||||||||| | Sbjct 49332 TCGAACCGAGCGATACGATCGAAAATGTGAAGGCGAAAATTCAGGACAAAGAAGGCATTC 49391 Query 24100 CTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA-TGACAGAAACGTC 24158 | ||||| ||||| ||||| || | || |||||||||||||||||| ||| | || | Sbjct 49392 CGCCCGACCAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACAC-TG 49450 Query 24159 AGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || || || ||||| || || || || ||| ||||| Sbjct 49451 AGTGACTACAACATCCAGAAGGAGTCCACACTTCAT 49486 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | |||||||| | || || | ||||| || | | Sbjct 50422 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50481 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || ||| ||||| |||||||| || || || || || || Sbjct 50482 TGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 50541 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | || |||||||||||| ||||| | | | | ||||| || || Sbjct 50542 GCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAA 50601 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || ||| ||||| | || || | ||||||||||| Sbjct 50602 CATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTGAGAGGAGGA 50650 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | |||||||| | || || | ||||| || | | Sbjct 50650 AATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50709 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || ||| ||||| |||||||| || || || || || || Sbjct 50710 TGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 50769 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||||| |||| | | |||||||||||| ||||| | | | | ||||| || || Sbjct 50770 ACAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAA 50829 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || || || || ||| ||||| Sbjct 50830 CATCCAGAAGGAGTCCACACTTCAT 50854 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| | |||||||| | || || | ||||| || | | Sbjct 50194 AATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50253 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || ||| | || ||| ||||| |||||||| || || || || || || Sbjct 50254 TGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 50313 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | || |||||||||||| ||||| | | | | ||||| || || Sbjct 50314 GCAAAGGTTGATCTTCGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAA 50373 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||| || || || || ||| ||||| Sbjct 50374 CATCCAGAAGGAGTCCACACTTCAT 50398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429879388714620