Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq10493 109 5e-19 seq10777 107 2e-18 seq10485 91.5 1e-13 seq10803 89.7 5e-13 >seq10493 Length=264610 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||| || |||||||| || ||| Sbjct 49509 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49450 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || |||||||| ||| |||| | | || ||||| || || Sbjct 49449 AGTGTGCGTCCGTCTTCGAGTTGCTTGCCGGCGAAGATAAGTCTTTGTTGGTCGGGCGGA 49390 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| |||||| ||| | | || | |||||| | | |||| Sbjct 49389 ATGCCTTCTTTGTCCTGAATTTTCGCCTTCACATTTTCGATCGTATCGCTCGGTTCGACC 49330 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| ||||| ||||| || || || ||||||||| Sbjct 49329 TCTAAAGTGATGGTTTTTCCGGTCAGAGTCTTCACAAAGATCTGCATG 49282 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||| || |||||||| |||||| Sbjct 50421 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50362 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || |||||||| ||| |||| || | |||||||| || ||| Sbjct 50361 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50302 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || || | | ||| | || || | | || | Sbjct 50301 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 50242 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || |||||||| |||||||||||||| Sbjct 50241 TCCAAAGTGATGGTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50195 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | || ||| || || | ||| | || |||||||| || |||||||| |||||| Sbjct 50649 CCTCCTCTCAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTC 50590 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || |||||||| ||| |||| || | |||||||| || ||| Sbjct 50589 AGTGTGCGACCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 50530 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || || | | ||| | || || | | || | Sbjct 50529 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 50470 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || |||||||||||||| Sbjct 50469 TCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 50423 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || |||||||| || |||||||| ||||||| ||||| | Sbjct 49953 CGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCG 49894 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || |||||||| ||| |||| || | |||||||| || ||||| || |||||| Sbjct 49893 TCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTG 49834 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||| | || || | | || | || | || | | Sbjct 49833 TCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATG 49774 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| || |||||||||||||| Sbjct 49773 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49739 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || |||||||| || |||||||| ||||||| ||||| | Sbjct 50181 CGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCG 50122 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || |||||||| ||| |||| || | |||||||| || ||||| || |||||| Sbjct 50121 TCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCTTTG 50062 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||| | || || | | || | || | || | | Sbjct 50061 TCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATG 50002 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || ||||| || |||||||||||||| Sbjct 50001 GTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49967 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || | ||| | || |||||||| || |||||||| ||||||| ||||| | Sbjct 50865 CGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGTGTGCGACCG 50806 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || || |||||||| || |||| || | ||| ||||| || ||||| || |||||| Sbjct 50805 TCTTCAAGTTGCTTGCCGGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCTTTG 50746 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||| | || || | | || | || | || | | Sbjct 50745 TCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACTTCCAAAGTGATG 50686 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || |||||||| |||||||||||||| Sbjct 50685 GTCTTTCCAGTGAGAGTTTTGACGAAAATCTGCAT 50651 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | || |||||||| || |||||||| || ||| Sbjct 49737 CCTCCACGAAGACGTAGAACCAGATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCACTC 49678 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||| || || |||||||| ||| |||| || | |||||||| || ||| Sbjct 49677 AGTGTGCGTCCGTCTTCAAGTTGCTTGCCGGCGAAGATCAACCTTTGCTGGTCTGGTGGG 49618 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || || | | ||| | || || | | || | Sbjct 49617 ATACCCTCTTTGTCTTGGATCTTGGCTTTCACATTCTCAATTGTGTCACTTGGTTCAACT 49558 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || ||||| || |||||||||||||| Sbjct 49557 TCCAAAGTGATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 49511 >seq10777 Length=1546546 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | || | ||||||||| || || |||||||| ||||| Sbjct 767692 CCTCCTCGGAGACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTT 767633 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||| || || ||| | ||||||||||| ||||| || || Sbjct 767632 AGGGTTCGGCCATCTTCAAGCTGTTTTCCGGCGAAAATTAAACGCTGTTGGTCTGGGGGA 767573 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| || | | ||| | || || | | ||||| Sbjct 767572 ATGCCTTCCTTGTCTTGAATTTTCGCTTTTACATTCTCGATCGTGTCACTAGGCTCGACT 767513 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | |||||||| || || ||||| || || || ||||||| Sbjct 767512 TCTAGGGTGATAGTTTTACCAGTGAGTGTTTTCACAAAGATTTGCATGA 767464 >seq10485 Length=261005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| || || | || | ||||||||| || || |||||||| ||||||| ||| || Sbjct 97649 ACGTAGAACCAGGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTTCGGCC 97590 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || || || || || ||| | ||||||||||| ||||| || || || ||||| || Sbjct 97589 ATCTTCGAGTTGTTTACCAGCGAAAATTAAACGCTGTTGGTCTGGGGGAATGCCTTCCTT 97530 Query 131139 GTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAA 131197 ||| ||| ||| || || | | || | |||||| | | ||| | || | ||| | Sbjct 97529 GTC-TTGAATTTTAGCTTTCACATTTTCGATCGTATCGCTAGGCTCAACTTCTAGGGTGA 97471 Query 131198 CGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || ||||| || || || ||||| Sbjct 97470 TAGTCTTGCCAGTGAGTGTTTTCACAAAGATTTGCAT 97434 >seq10803 Length=2816097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 |||||||| | ||| ||||| || | || ||| || | | || | ||| ||| | Sbjct 2060774 TGATTGACAATCTGGAACTCTCCTGACAGCACGCGTCTAGAGTAGATATTACTAGTGTAT 2060833 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 || |||| ||| ||||||||||| || || ||||| || | || ||||||||| ||| Sbjct 2060834 GGCTCAATAGATTCGTTATTGCCAAGTATCTGAGCAGTGGACGCCGTGGGCATGGGCGCA 2060893 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCC 145234 | || || ||||| ||||| || | ||||| | | ||| |||| |||| ||| Sbjct 2060894 ATCAGTAGACTGTTGCGGAGGCCATGTTCCTTGACCTTCTTCTTCAGCGCCTCCCAGTCC 2060953 Query 145235 CATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 || || | || | || | ||| | ||||||||||| | || | ||||||||| Sbjct 2060954 CACAGGTTTGAGGGAGTGACATTCCAGAGATCGTACTGCAATAACCCTTGGCTGGCGGG 2061012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471949054671360