Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8589 246 4e-60 seq10803 131 2e-25 seq10743 123 3e-23 >seq8589 Length=14632 Score = 246 bits (272), Expect = 4e-60 Identities = 409/584 (70%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 32663 TGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 32722 ||| ||||| || || | || || || | | |||||| ||||| ||||| || | || Sbjct 5797 TGCAAAATCACAATGCACTCCTTCATCACGAGAAATTAACTCGTTAGAAAATGTTAAACC 5856 Query 32723 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAAT 32782 ||||||| || | || || | |||||| || || ||| | ||| || ||||| || Sbjct 5857 AGGCATTAACCCTCTTTTCTTTAACCAAAAAATAGAACAAAACGCTCCTGAGAAGAATAT 5916 Query 32783 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCA 32842 |||||| || || ||||| || |||||||| || || || | ||| ||||| Sbjct 5917 TCCTTCCACAGCTGCAAATGCGATAAGTCTTTCAGCAAAAGAATCAGACTCA---ATCCA 5973 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||| ||||| || || || |||||| || | || ||||||| || | Sbjct 5974 TTTTAATGCCCATTCTGCTTTTCTTTTTATTGCTGGAAACACTTCAATAGCATGGAATAA 6033 Query 32903 ATAGtttttttCATTACT-ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 32961 | | ||| || | || |||||| ||||| ||||||||||||||| ||| |||| Sbjct 6034 TTTATCTTTCTC-TACCTCATCTTTCACATAAGTATCAATCAAAAGAGAATAGGTTTCGC 6092 Query 32962 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTA 33021 |||||| || || || ||||||||||| ||||| || |||| |||| | || | Sbjct 6093 TATGAATATTCTCCATCATAATTTGAAATCCATAGAAAAATTTAGCTTCGGCATATTGCA 6152 Query 33022 CTTC-TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33080 |||| | ||||||| ||||||||||||||||||||| || |||||| || |||||| Sbjct 6153 CTTCATTAACAAAAT-TTTCTGCTAAATTTTCATTCACAATCCCGTCAGATGCAGCAAAA 6211 Query 33081 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT---TATTCCAATCA 33137 || || || | ||| || |||||||||||||| ||| ||| || | ||||| || Sbjct 6212 AAAGCTAAAATATGCTTAATAAAATATTTTTCATCTTCATTTAATTTCGTGTTCCAGTCT 6271 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 ||||||||| | | ||| | |||||| | |||||||| |||||| ||||| Sbjct 6272 GTGATATCTTGATGCAAATCTATTTCTTCAGCAGTCCAAAAACTTGCCTCCATTTTTTTG 6331 Query 33198 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||| | ||| || ||||||| | |||||||||||| ||||| Sbjct 6332 TACCATTCCCAAATATCATGATGCTTAATTGGAAAAATGACAAA 6375 >seq10803 Length=2816097 Score = 131 bits (144), Expect = 2e-25 Identities = 219/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 ||| ||||| || || ||||||| || | ||| || ||| || ||||||| || Sbjct 2064210 ACCAATTCCTCCAGCATTTTTAGAAATAAGTGCACAAGTCCTTAGAGTTCCATAGATTCC 2064269 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 || ||||||||||| ||| |||| ||||| || || |||||||| | || | || Sbjct 2064270 TTCAATACTATCATCAGACATTGTAAGAAGAAAGCAACTGGACATTTGTGGTCGGTTTGT 2064329 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 || || ||||| | ||| || || || || || ||||| |||||||| | || ||||| Sbjct 2064330 GCCTGCGTTAAACAGGGTTGGTGATGCATGGGTGAACCACTTTTCAGACATCAGGTTGTA 2064389 Query 63529 CGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 ||||||||||| | || || || || | || ||||| || || ||||||| || Sbjct 2064390 AGTCTCAATAGCAGCATCAATGTCTTCACCG-TGGATTCCCACACTCACTCGCATTAGCA 2064448 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 ||||||| ||||| || | | |||| || || || | | ||| ||| | ||| | Sbjct 2064449 TGTGCTGTGGTCTCTCTGCTACCTTGCCATTGATCTTTAGTAGGTATGATCTCATCAAGG 2064508 Query 63648 T-TTTAAAACCAA 63659 | || |||||||| Sbjct 2064509 TCTTAAAAACCAA 2064521 >seq10743 Length=1036592 Score = 123 bits (136), Expect = 3e-23 Identities = 170/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 32738 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 107837 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 107896 Query 32798 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 32854 |||||| |||| ||||| ||| | || || | || ||||| || ||||||| Sbjct 107897 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGATTGATCCAGTTCAGAGCCCA 107956 Query 32855 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 32914 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 107957 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 108016 Query 32915 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 108017 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 108073 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 32738 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 63022 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 63081 Query 32798 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACTTTTGAGCCCA 32854 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 63082 AAAGGCGATAATCCTCTCGCCAAATGATGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 63141 Query 32855 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 32914 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 63142 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 63201 Query 32915 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 63202 CGCCTTGTCTTTGATCAGGCTCTCTATCAGAAGGCTGTACATCTCAGAGTGGATGTT 63258 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 32738 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 76902 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 76843 Query 32798 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCA 32854 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 76842 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 76783 Query 32855 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 32914 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 76782 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 76723 Query 32915 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 76722 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 76666 Score = 120 bits (132), Expect = 4e-22 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 32738 CTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGC 32797 ||| || ||||| || |||| ||||| || ||||||||||| || || ||||| || || Sbjct 90149 CTTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGC 90090 Query 32798 AAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCA 32854 |||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 90089 AAAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCA 90030 Query 32855 ATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttC 32914 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 90029 GTGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTC 89970 Query 32915 ATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 89969 TGCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 89913 Score = 118 bits (130), Expect = 1e-21 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 32739 TTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCA 32798 || || ||||| || |||| ||||| || ||||||||||| || || ||||| || ||| Sbjct 81884 TTCTTCAGCCAGAAAATGGCAGCAAAGGACCCAGAAAAGAAGATGCCCTCTACGGCAGCA 81825 Query 32799 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACTTTTGAGCCCAA 32855 ||||| |||| ||||| ||| | || || | | ||||| || ||||||| Sbjct 81824 AAGGCGATAATCCTCTCGCCAAATGAAGCTCTCTGGGGGTTGATCCAGTTCAGAGCCCAG 81765 Query 32856 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 32915 | |||||||| | ||||||||||||||||| |||||||| || |||| | |||||| Sbjct 81764 TGCGCCTTCTTCATGACACAAGGCATTGTCTCAATAGCATTGAACAGATTGACTTTTTCT 81705 Query 32916 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 32971 | ||||| | | || |||| ||| || ||||| || || || ||||| Sbjct 81704 GCCTTGTCTTTGATCAGGCTCTCGATCAGAAGGCTGTACATCTCAGAGTGGATGTT 81649 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || || ||||||||||| || ||||| | ||||||||||||| ||| Sbjct 63488 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 63547 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 63548 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 63607 Query 33093 TG 33094 || Sbjct 63608 TG 63609 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || || ||||||||||| || ||||| | ||||||||||||| ||| Sbjct 76525 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 76466 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 76465 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 76406 Query 33093 TG 33094 || Sbjct 76405 TG 76404 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || || |||||||||||||| ||||| | ||||||||||||| || Sbjct 81418 TCAATAGCAATCTGGAAGCCGTAGAAGCATCTGGCCTCAGGAATCTGTACTTCTTGACTG 81359 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 81358 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 81299 Query 33093 TG 33094 || Sbjct 81298 TG 81297 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || || ||||||||||| || ||||| | ||||||||||||| ||| Sbjct 89773 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACAG 89714 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 89713 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 89654 Query 33093 TG 33094 || Sbjct 89653 TG 89652 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 32973 TCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAA 33032 ||||| || || || || ||||||||||| || ||||| | ||||||||||||| || Sbjct 108302 TCAATAGCAATCTGGAAGCCGTAGAAGCACCTGGCCTCAGGAATCTGTACTTCTTGACTG 108361 Query 33033 AATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACA 33092 || | ||| | | ||||||||| || || || || ||||| ||||| || ||||||||| Sbjct 108362 AAGCACTCTACAAGATTTTCATTGACGATGCCATCGCTGGCCGCAAAGAATGCCAATACA 108421 Query 33093 TG 33094 || Sbjct 108422 TG 108423 Score = 82.4 bits (90), Expect = 1e-10 Identities = 164/243 (67%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 32492 TCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTT 32551 ||||||||| ||||| || ||||| | |||||| |||| ||||| || || || || Sbjct 90881 TCTATCTGCAACAAACTCAATATACTGTCTCATCAAGGCACAGTTCATGCCAATCAGCTT 90822 Query 32552 AACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGA 32611 ||||||||||| || || || || || ||||| || || || | || || Sbjct 90821 GACTGGAAGAGCAGATGTGAGGAACTCCTGCTCAATGACAACAGCATCCTTGATGATTCC 90762 Query 32612 TCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATC 32671 ||| || || || ||| || || | || | || ||||||| || || || || Sbjct 90761 TCTAACAGTCTCCTCATCAGGCTTATTAACTAGGTACTTGTACATCAAGCAGGCAAAGTC 90702 Query 32672 GCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAG 32731 ||| || ||||| || ||||| || || | || || || || || || || ||||| || Sbjct 90701 GCAATGGAGACCTTCATCTCTGCTGATAAGCTCATTCGAGAATGTCAGACCTGGCATAAG 90642 Query 32732 GCC 32734 || Sbjct 90641 TCC 90639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633546427998400