Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10485 147 2e-30 seq10777 127 2e-24 seq10493 125 6e-24 >seq10485 Length=261005 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| ||||||| ||| ||||||| | ||||| || | Sbjct 97889 AATGCAAATCTTTGTGAAGACCCTGACCGGGAAAACCATCACTCTAGAAGTTGAACCAAG 97948 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| |||| || |||| ||| ||||| ||||| ||||| || |||| Sbjct 97949 CGACACAATCGAGAATGTGAAAGCTAAAATTCAA-GACAAGGAAGGCATTCCCCCAGACC 98007 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| |||||| | ||||||| || || | |||| |||| Sbjct 98008 AACAGCGTTTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTTAGCGACTACA 98067 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 | || || ||||| || || || || || || ||| | || ||||||||||| || Sbjct 98068 ACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTACGTCTCAGAGGAGGAAACTA 98122 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || | || || || | ||||| | ||||| ||| | Sbjct 97433 AATGCAAATCTTTGTGAAAACACTCACTGGCAAGACTATCACCCTAGAAGTTGAGCCTAG 97492 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| |||| || |||| ||| ||||| ||||| ||||| || |||| Sbjct 97493 CGATACGATCGAAAATGTGAAAGCTAAAATTCAA-GACAAGGAAGGCATTCCCCCAGACC 97551 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| || || |||||| | ||||||| || || || |||| |||| Sbjct 97552 AACAGCGTTTAATTTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACA 97611 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| || || || || | || ||| | || |||||||||| Sbjct 97612 ACATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCAGAGGAGGAA 97662 >seq10777 Length=1546546 Score = 127 bits (140), Expect = 2e-24 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || |||||| | ||||| | ||||| ||| | | Sbjct 767466 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAACTATCACCCTAGAAGTCGAGCCTAGT 767525 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | || |||| |||| ||| ||||| ||||| ||||| || ||| Sbjct 767526 GACACGATCGAG--AATGTAAAAGCGAAAATTCAA-GACAAGGAAGGCATTCCCCCAGAC 767582 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | ||||| ||||| ||||| | ||||||| || || | |||| ||| Sbjct 767583 CAACAGCGTTTAATTTTCGCCGGAAAACAGCTTGAAGATGGCCGAACCCTAAGCGACTAC 767642 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||| || || || || | || ||| | || ||||||||| Sbjct 767643 AACATCCAGAAAGAGTCGACCCTTCACCTGGTTCTACGTCTCCGAGGAGGAA 767694 >seq10493 Length=264610 Score = 125 bits (138), Expect = 6e-24 Identities = 176/243 (72%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 24986 ACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGA 25045 || |||| |||| |||| || ||||| |||||| ||||||| ||| ||||||| | || Sbjct 49271 ACCAAACTCAACA-TGCAGATCTTTGTGAAGACTCTGACCGGAAAAACCATCACTTTAGA 49329 Query 25046 AGTGGAGTCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGA 25104 || || || || || ||||| ||||| | |||| ||| ||||||||||| | Sbjct 49330 GGTCGAACCGAGCGATACGATCGAAAATGTGAAGGCGAAAATTCAG-GACAAAGAAGGCA 49388 Query 25105 TTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTG 25164 |||| || |||||||| | |||| || |||||||| ||| | ||||| | ||||| Sbjct 49389 TTCCGCCCGACCAACAAAGACTTATCTTCGCCGGCAAGCAACTCGAAGACGGACGCACAC 49448 Query 25165 TGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAG 25224 || | || ||||| || || || || ||||| || ||| | || ||| | || | |||| Sbjct 49449 TGAGTGACTACAACATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGTCTTCGTGGAG 49508 Query 25225 GAA 25227 ||| Sbjct 49509 GAA 49511 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | || || || ||||||| | ||||| || | Sbjct 50650 AATGCAGATTTTCGTCAAAACTCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCAAG 50709 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| || ||| |||| || ||| |||||||| || || ||||| ||||| Sbjct 50710 TGACACAATTGAGAATGTGAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCA 50769 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || ||||||||||| ||| | ||||| | |||||| || |||| ||||| Sbjct 50770 ACAGAGGTTGATCTTTGCCGGCAAGCAACTTGAAGACGGTCGCACACTGAGCGACTACAA 50829 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || || || ||||| || ||| | || ||| | || | |||||||| Sbjct 50830 CATCCAGAAGGAGTCCACACTTCATCTGGTTCTACGCCTTCGTGGAGGAAA 50880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433270942077260