Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nematostella_20vectensis_20[refseq_20GCF_5F000209225.1_202007-08-22] 10,804 sequences; 356,613,585 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq6294 102 9e-17 seq10540 86.0 7e-12 >seq6294 Length=7318 Score = 102 bits (112), Expect = 9e-17 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 162268 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCACAGGTTCGAATCCTGT 162327 ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct 6621 GTAGCTCAGCTGGATAGAGCATCTGCCTTCTAAGCAGACGGTCACAGGTTCGAATCCTGT 6680 Query 162328 C 162328 | Sbjct 6681 C 6681 >seq10540 Length=328569 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 15972 AGGGCGAATAGCTCAGC-GGT--AGAGCTACTCGTTTACACCGAGTCGGTCGGGGGTTCG 16028 ||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||||| Sbjct 2641 AGGGCGATTAGCTCAGCTGGTTCAGAGCACCTCGTTTACACCGAGGGGGTCGGGGGTTCG 2582 Query 16029 ATCCCCTCTTCGCCCA 16044 | |||||| ||||||| Sbjct 2581 AACCCCTCATCGCCCA 2566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567155395318400